KEGG   Drosophila simulans: Dsimw501_GD24645
Entry
Dsimw501_GD24645  CDS       T01065                                 
Symbol
Dsim_GD24645
Name
(GenBank) uncharacterized protein, isoform A
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
dsi  Drosophila simulans
Pathway
dsi03013  Nucleocytoplasmic transport
dsi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dsi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    Dsimw501_GD24645 (Dsim_GD24645)
   03015 mRNA surveillance pathway
    Dsimw501_GD24645 (Dsim_GD24645)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsi03019]
    Dsimw501_GD24645 (Dsim_GD24645)
Enzymes [BR:dsi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     Dsimw501_GD24645 (Dsim_GD24645)
Messenger RNA biogenesis [BR:dsi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     Dsimw501_GD24645 (Dsim_GD24645)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     Dsimw501_GD24645 (Dsim_GD24645)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD Helicase_RecD AAA_22 UvrD-helicase AAA_16 ATPase nSTAND3 SRP54 AAA_10 AAA_32 AAA_5
Other DBs
NCBI-ProteinID: KMZ09378
FlyBase: FBgn0195973
Position
X
AA seq 1180 aa
MSVDTYAPSSALSFLDMDDNELLPGADTQPTQYDYRDFTMPSNSQSQTQNDQLEMHSRRS
AGDSHPRLASITNDLADLQFEEEDDEPGSSYVKELPPHACKYCGIHDPATVVMCNNCRKW
FCNGRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIPAKADS
VVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQIN
KLEELWKDNIEATFQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKES
ATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGEMYNPWSEVGHVIKV
PDNFGDDVGLELKSSTSAPVKCTSNFTVDFIWKCTSFDRMTRALRKFAIDRNSVSNFIYS
RLLGHGRADSNDEVLFRGPQPKLFSAPHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKT
VTSATIVYQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFL
ALHNQIRNMETNSELKKLQQLKDETGELSSADEKRYRSLKRASENQLLEAADVICCTCVG
AGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWP
QPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQR
AYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLN
VALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPKKLV
NSMNIGAHFMSNIIADAKEVMVPGSIYDRSGGYGQGRQMVGQAMNGAQYGGSGGSPYGNS
PLGYGAPSSNSMMGFGMGSGGNGAAGGNNNFGGAGPSWAAAQLHHDSIGYISNEHGAATL
GNMPVPVGMFMNMSNIPPRFYNQHQQAIMAVKQNRAVQQQSGNFSPGNSGIGVTGVGAGR
SASLGGNKKTHKLGKSRVMGGGTGGAPQTQGTSVSNAAPYSQQPMPLSLQMTQPSGFALS
QQPELSQDFGQISQMDGLLSQDVAFNVSGERSLNQFSQPY
NT seq 3543 nt   +upstreamnt  +downstreamnt
atgagcgtggacacgtacgcgcccagctcggcgctgtcgttcctggacatggacgacaac
gagctgcttccgggagcggatactcaacccacgcagtatgattaccgcgacttcaccatg
ccctccaactcacagagccagacccagaatgatcagctcgagatgcactcacgccgctct
gccggagactcgcatccacgactggccagcatcaccaacgatctggccgatctgcagttc
gaagaggaggacgacgagcctggcagctcgtatgtgaaggagctgccgccgcatgcgtgc
aagtattgcggcatccatgatccagccacggtggtcatgtgcaacaattgccgcaaatgg
ttttgcaacggtcgtggaagcacttccggttcgcacatcatcaaccatctggtgagggcc
aagcaccgcgaggtgacgctccacggggaaggtcccctgggcgagacaatcctggagtgc
tactcctgtggtgtgcgcaacgtctttgtgcttggcttcattccggccaaggccgattct
gtggtcgtgctgctctgccgccagccgtgtgccgcccagaattcgctaaaggacatgaac
tgggaccaggagcagtggaagcctctaattgcagaccgctgctttttggcctggctggta
aagcaacccagcgaacagggacagctgcgagcgcgccaaatctcagccgctcagatcaac
aagctggaggagctatggaaggataatattgaggccacgttccaagatctggagaagcca
ggcattgactcggagccagcacatgtgctactccgctacgaggatggctatcagtacgag
aagacctttgggccgcttgtccgcctcgaggccgaatacgaccaaaagctgaaggagtcg
gccacgcaggagaacatcgaggtacgttgggacgtcggcctcaacaaaaagaccattgcc
tactttacgctggcgaagaccgattcggacatgaagcttatgcatggcgacgagctgcgc
ctgcactacgtgggcgagatgtacaatccgtggagcgaggtcggccacgttatcaaggtg
ccggacaatttcggcgatgacgtcggcctggagctgaaatcctcaacgagtgccccggtc
aagtgcaccagcaactttacggtggacttcatttggaagtgcacgtcatttgaccgcatg
actcgtgctctgcgcaaattcgccatcgatcgcaactcggtgtcaaacttcatctactcg
cgcttgttgggccacggtcgtgcggattccaacgacgaggtgctgttccgcggcccgcag
cccaaactctttagtgccccgcatctgcccgatttgaatcgcagccaggtgtacgccgtg
aaacacgcgcttcagcgtccgctctcgctgatccaagggccgcctggcacgggcaaaacc
gtaacttcggcgaccatcgtttaccagctggtcaagctccatggtggcacagtgctggtg
tgcgctcccagcaacacggccgtggatcagctaactgagaagatccaccgcacaaacctt
aaagtggtgcgtgtttgcgccaaaagtcgtgaggccatcgatagcccggtaagcttcctg
gcgctgcacaaccaaatccgtaacatggagaccaactcggagctaaagaagctgcagcag
ctgaaagacgagaccggtgagctgagctcagctgacgaaaagcgctaccgcagcctgaaa
cgtgcctccgagaaccaactgctggaggctgccgacgttatctgctgtacatgcgtgggc
gccggcgatggacgtctatcgcgagtcaagttcacctcgatcctgatcgatgagtctatg
cagtcgacggagccggagtgcatggtgccagtggtgctgggcgccaagcagctgatcctc
gtgggcgatcactgccagctgggaccggttgttatgtgcaaaaaagcagctcgtgccggc
ctttcgcaaagtttgttcgagcgcctggtggttctgggcatccgtccgttccggctggag
gtgcaatatcgtatgcaccccgagctgtcccagttcccgtccaacttcttctacgaggga
tcgctgcagaacggcgtctgcgcggaggatcgtcgccttaagctggatttcccatggcca
cagccggaaagaccgatgttcttcctggtaacgcagggacaggaggagattgccggctcc
ggcacctcgttcctcaaccgcacagaggcggccaacgtggaaaagattacgacgcgattc
cttaaggcaggcatcaagccggaacaaattggaatcatcacgccttacgaaggtcagcgc
gcgtacctggtgcagtacatgcaataccagggcagcctgcactctcgcctataccaggag
atcgagatcgccagtgtggacgcgttccagggacgtgagaaggacattattatcatgtct
tgcgtgcgatctaacgagcgtcaaggcatcggttttttgaacgacccacgtcgccttaac
gttgcccttacccgggccaagttcggcatcatcattgtgggcaatcccaaagtgctcgcc
aagcagcagctgtggaaccatctgctcaacttctacaaggaccgtaaggtgctcgtcgag
ggatctctgaataaccttaaggagtcgctcatccacttccaaaagcccaagaagctcgtc
aacagcatgaacattggggcacattttatgtctaacattattgccgacgctaaggaagtg
atggtaccgggctccatttacgatcgcagtggcggttacggccaaggtcgacaaatggtg
ggacaggcaatgaatggcgcccagtatggtggcagtggaggtagtccctacggaaactca
cctctcggctacggtgctcccagctccaactccatgatgggctttggcatgggcagcgga
ggcaatggcgcggccggtggcaacaacaacttcggaggggcaggacccagttgggcagct
gcccaactccaccacgactccattggctatatatccaacgagcatggagcagcaacccta
ggcaacatgccagtgccggttggcatgttcatgaacatgagcaatattccgccgcgtttc
tacaaccagcaccagcaggcgatcatggcggtcaagcagaatcgcgccgttcaacagcag
tcgggtaacttctctccgggtaactcgggtattggagtcactggagtcggagccggacga
agcgcctccctaggcggcaataagaagacccacaagctgggaaaatcgcgggtaatgggc
ggtgggactggtggagcaccgcaaacacaaggaacctcggtatccaatgctgctccatac
agtcagcaaccgatgcctttgtcgctgcagatgacccagcccagcggttttgctctgtcc
cagcagccagaactttcacaggactttgggcaaatatcgcagatggacggtttgctatcc
caggatgttgcctttaacgtgtcgggcgagcggagtttgaatcagttctcacagccttat
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   FLYBASE (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (31)   

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