KEGG   Dactylococcopsis salina: Dacsa_3028
Entry
Dacsa_3028        CDS       T02378                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
dsl  Dactylococcopsis salina
Pathway
dsl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dacsa_3028
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsl03019]
    Dacsa_3028
   03016 Transfer RNA biogenesis [BR:dsl03016]
    Dacsa_3028
Enzymes [BR:dsl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Dacsa_3028
Messenger RNA biogenesis [BR:dsl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Dacsa_3028
Transfer RNA biogenesis [BR:dsl03016]
 Prokaryotic type
  tRNA degradation factors
   Dacsa_3028
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2 SPATA25 KhpA-B_KH
Other DBs
NCBI-ProteinID: AFZ51565
UniProt: K9YZ10
Position
3107049..3109205
AA seq 718 aa
MMEFEQSISFDGRDIRLKVGRFAPQAGGSVLIECGDTSVLVTATRSRGREGMDFLPLIVD
YEERLYAAGRIPGGFLRREGRPPEKVTLTSRLIDRPLRPLFPQWIRDDIQVVATTLSMDE
LVPPDVLAVTGASFAVICAGIPFYGPMAGVRVGLVGDDFIINPTYDEIKNGDLDLVVAGT
PDGVVMVEAGANQLPEQDVIEAIEFGYEAVRDLIEAQKQLMKEQGISIATEEPPAVDPTL
EEFIKSKATEPIKKVLQQFDLDKKGRDELLDEIKETEIESAIEALPEDDPLRVTVTEDPK
AIGKVFKEVTRHLMRRQIIEDGVRVDGRKLDQVRPVSCDVDVLPKRVHGSGLFRRGLTQV
LSLATLGTPGDAQDLADELHPNDEKRYLHHYNFPPYSVGETKPLRSPGRREIGHGALAER
AIMPILPSKEDFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLTKPVSGAAMGLI
KEEDEVRVLTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVVRQAIEQALPA
RLHILEKMLATIDKPKSELSPFAPHLINYRIDPDMIGLVIGPGGKTIKNITEQTGAKVDI
EDSGAMTISAPDRDSAIAALNHVKGLTRKISEGDVCVGRVTRIIPIGAFVELMPGKEGMI
HISQLAEYRVGKVEDEVAVDDEIVVKVREIDNKGRLNLTRLNIHPDEAAAARVAVESE
NT seq 2157 nt   +upstreamnt  +downstreamnt
atgatggaatttgaacagtcaatatcctttgatggtcgggatattcggcttaaggtggga
cggttcgcaccccaagccggcggttcggttttaattgaatgtggagacacttcggtatta
gtcacggctactcgtagtcgtggacgggaaggaatggattttttacctctaattgtggat
tatgaggaaagactttacgcggctggtcgtatcccaggcggttttttgcgtcgagaaggt
cgtcctcctgaaaaagtcactttaaccagtcgtttgatcgatcgaccgctacgtccttta
tttcctcaatggatacgggatgatattcaagtcgtagcgacaacgttatcaatggatgag
ttagttcctcccgatgttttggcagtaacaggcgcttcttttgcggtaatctgcgcgggg
attccgttttatggcccaatggcaggtgtgcgtgtcggtttagtgggagatgattttatt
attaaccccacctatgatgaaataaaaaatggtgatttagatttagtggtcgctggaacg
ccagatggcgtggtcatggtggaagcgggtgcgaatcagctacccgaacaagatgtcatc
gaagccattgagttcggttatgaggcggttcgagatttaattgaagcccaaaagcagtta
atgaaggaacaagggattagcatcgcaacggaagaaccacccgccgttgatccgacatta
gaagagtttattaagtctaaggcaactgaaccgattaagaaggtgttacaacagtttgat
ctcgataagaaaggacgggatgaactgttagatgagattaaggaaacagaaattgaaagc
gcgatcgaggcactccctgaagatgatccgttacgagtcacggtgacagaagacccgaaa
gccattggtaaagtatttaaagaggtcactcgccatctcatgcgtcgccaaattattgaa
gatggggtgcgtgtggatggacggaaactggatcaggtgcgtcccgtgagttgtgatgtg
gatgtactaccgaaacgagttcatggtagtggtttatttcgtcgcggtttaacacaagtg
ctgtctttagccacgttgggaacgccaggagatgcccaagatttagccgatgaactccat
cccaatgatgaaaagcgttatctccatcattataattttccgccctattctgtaggagaa
acgaaaccgctacgatcgcccggacgacgggaaattggtcatggggctttagcagaacgg
gcaatcatgccaattttaccttctaaagaggatttcccttatgtgttacgagtggtgtcg
gaggtgctttcttccaacggttcgacttctatgggatcggtgtgtggatcgacgttagcg
ttgatggatgcgggtgttcctctcaccaaacccgtcagtggcgcggcgatgggtttgatt
aaggaagaggacgaagttcgcgttttaaccgacattcaaggaattgaagatttcctcggt
gatatggactttaaagtagcgggaactgatagcggcattacggcgttacagatggatatg
aaaattacgggactcagtttggatgtggtgcgtcaagccattgaacaagcactccccgcg
cggttgcatatcttggagaaaatgctggcaaccattgataagccgaaatcagagttatcg
ccgtttgcaccgcatctgattaattacagaattgatcctgatatgattggtttagtgatc
ggtcctgggggtaaaaccatcaagaatattacggaacaaacgggcgctaaagttgacatt
gaagacagtggcgcgatgacaatttctgcccccgatcgagatagcgcgatcgcggctttg
aatcacgttaaaggcttaactcgtaaaattagcgagggagatgtctgcgttggtcgtgtt
acccgtatcatcccgatcggtgcgtttgtagagttaatgcctggcaaagaaggcatgatt
cacatttctcagcttgcggaataccgtgtcggtaaagtcgaagacgaagtggctgtggat
gatgaaatcgtcgtgaaagtgcgggaaattgataataagggacgtttaaacctcactcgc
cttaatatccatcctgatgaagctgccgccgcccgtgttgccgttgaaagcgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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