KEGG   Dickeya solani IPO 2222: A4U42_04835
Entry
A4U42_04835       CDS       T04410                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
dso  Dickeya solani IPO 2222
Pathway
dso03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dso00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A4U42_04835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dso03019]
    A4U42_04835
   03016 Transfer RNA biogenesis [BR:dso03016]
    A4U42_04835
Enzymes [BR:dso01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A4U42_04835
Messenger RNA biogenesis [BR:dso03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A4U42_04835
Transfer RNA biogenesis [BR:dso03016]
 Prokaryotic type
  tRNA degradation factors
   A4U42_04835
SSDB
Motif
Pfam: RNB OB_RNB CSD2 HTH_12 S1 TFIIE_beta Rho_RNA_bind RNase_II_C_S1 Dimerisation
Other DBs
NCBI-ProteinID: ANE74704
Position
complement(1137777..1140260)
AA seq 827 aa
MSQDPFLEREAEKYESPIPSREYILEHLAKRDTPISREELATDLQLTTDEQLEALRRRLR
AMERDGQLVFTRRQCYALPEKLDLLRGTVLGHRDGYGFLRVEGRKDDLYLSAEQMKTVIH
GDVVLAQPLGEDRRGRREGRIVRILEPRTNQIVGRYFTEAGTGFVVPDDSRLSFDILIPP
EFIAGARMGSVVVVELTQRATRRTKAIGKVVEILGDNMGTGLAVDIALRTHEIPHSWPPK
VEEQVSDLAEEVPENAKKGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TQGKLSGYTFYEAVMSSHARLTYTKVWSILQGDEALREHYQPLVAPLEELHRMYKVLDHA
REVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANISAAKFVEKGEEP
ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMDSIADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALTSYAHFTSPIRRYPDLSLHRAIKYLLSDRKARWTHSGGWH
SDFNEMLQLGEHCSMTERRADEATRDVADWLKCDFMQDHVGEAFTGIISSVTGFGFFVRL
NDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESRGQVYRLGDEVQIRVEAVHMDERKIDFA
LVSSTRKVRGEGKTARDRAKKGGEADAKPPRRRRTGQRANFEPNSAFRTEGDGKRQPAGK
AKDKDKAKTDGKKKTEKSQKNAEKTRKIAAATRAKRASKKKKPAEPA
NT seq 2484 nt   +upstreamnt  +downstreamnt
atgtcacaagatccgtttctggaacgtgaagcagaaaaatatgaatcccccatccccagc
cgcgagtacattcttgagcatctggcaaaacgggatacgcctatcagccgtgaggaactg
gccaccgatctgcaactgaccaccgatgagcaactggaggccctgcgccgccggttacgc
gccatggagcgcgatgggcaactggtgtttacccgccgccagtgctatgcgctgccggaa
aagctggatctgctgcgcggcacggtgcttggccaccgcgatggctacggtttcctgcgg
gtggaagggcgtaaagacgatctttacctctccgccgagcagatgaaaacggtgattcat
ggcgatgtggtgttggcccagccgttgggcgaagaccgcagagggcgccgcgaagggcgt
atcgtgcgcattctggagccccgcaccaaccagatcgtcgggcgttacttcaccgaggcc
ggcaccggcttcgtggtgccggacgacagccggctcagcttcgacatcctgatcccgccg
gaatttatcgccggcgcccgcatggggtcggtggtggtggtggaactgacccaacgtgcc
actcgccgcaccaaggctatcggcaaggtcgtggagatcctcggcgacaacatgggcacc
gggctggcggtggatatcgcgttgcgcacccatgaaattccgcacagctggccgcccaag
gtggaagagcaggtgagcgacctggcggaagaggtgccggaaaacgccaagaaaggccgg
gtggacctgcgttctctgccgctggttaccatcgacggcgaagacgcgcgcgattttgac
gatgccgtgtactgtgagaagaaacgcggcggcggctggcggctgtgggtggcgatcgcc
gacgtcagctattacgtgcgtcccggtacggcgctggaccatgaagcccgcgcgcgcggt
acctcggtctacttcccgtcgcaggtagtgccgatgttgccggaagtgctttccaacggg
ctgtgttcgctcaacccgcaggtggatcgcctgtgtatggtgtgcgaaatgacgatttcc
acccaagggaaactgtccggctataccttctatgaggcggtaatgagttcgcatgcccgc
ctcacctataccaaggtgtggagcatcctgcagggcgatgaggcgctgcgcgagcattac
cagccgctggtcgcgccgttggaagagctgcaccggatgtacaaggtgctggatcatgcc
cgtgaggtgcgcggcggcatcgcgttcgaaaccgaagaagccaaatttatcttcaacgct
gaacgccgcatcgagcgggtggaagcggtggtgcgcaacgacgcgcacaagctgattgaa
gaatgcatgattctggccaacatctcggcggcgaagtttgtcgagaagggcgaagaaccg
gcgctgttccgtgtgcatgaccagcccagcgaggatcatgtgttggcgctgcgcagcgtg
ctcggcgaactggggttgacgctgaaaggcggcatgaagccgcagccgaaagattatgcc
gaactgatggattccatcgccgacaggccggatcatgagatgctgcaaaccatgctgctg
cgttcgatgaaacaggcggtgtacgacccggaaaaccgcggtcatttcggtctggcactg
acttcgtacgcgcacttcacttcaccgattcggcgttacccggatctgtcgctgcaccgg
gccatcaagtacctgctcagcgatcgtaaagcccgctggacgcacagcggcggctggcac
tcggatttcaacgagatgctgcaactgggcgaacactgttcgatgaccgagcgccgggcc
gatgaagctacgcgcgacgtggccgactggctgaagtgcgacttcatgcaggatcatgtc
ggcgaagcctttaccggtattatctccagcgtcaccggttttggtttctttgtgcgtctc
aacgacctgtttatcgacggtctggttcatgtttcgacgctggataacgactactatcgt
tatgacaatgtcggccagcggttgattggcgaatcccgcggtcaggtgtaccgactgggg
gacgaagtgcagattcgcgttgaggccgtgcacatggatgaacgcaagatcgattttgcg
ctggtgtcttccacccgtaaggtccgcggtgaaggtaagaccgcgcgcgatcgggcgaag
aaaggcggcgaggcggatgcaaaaccgccgcgtcgtcgccgtaccggtcagcgcgccaac
tttgaaccgaacagcgcattccgtaccgaaggcgacggcaagcgtcagcctgccggcaag
gccaaggataaagataaagcgaaaaccgacggcaagaagaagacggaaaaatcgcaaaag
aacgccgaaaaaacgcgtaaaattgctgcagctactcgcgccaagcgcgccagcaaaaag
aagaaaccggcggagcccgcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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