KEGG   Dichomitus squalens: DICSQDRAFT_159781
Entry
DICSQDRAFT_159781 CDS       T03133                                 
Name
(RefSeq) transcription factor Tfb2
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
dsq  Dichomitus squalens
Pathway
dsq03022  Basal transcription factors
dsq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    DICSQDRAFT_159781
  09124 Replication and repair
   03420 Nucleotide excision repair
    DICSQDRAFT_159781
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dsq03021]
    DICSQDRAFT_159781
   03400 DNA repair and recombination proteins [BR:dsq03400]
    DICSQDRAFT_159781
Transcription machinery [BR:dsq03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     DICSQDRAFT_159781
DNA repair and recombination proteins [BR:dsq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     DICSQDRAFT_159781
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3 GRIP
Other DBs
NCBI-GeneID: 18837950
NCBI-ProteinID: XP_007362519
JGI: 159781
Position
Unknown
AA seq 506 aa
MVGPSIRIRPAGESSKASMVDGGETSHRLIGFLLSQPQSTMNRLYQKPSSCLSIFRLLQP
LERQIVMNLLWLETPIPGATMAAWVTREGKRPYQEALSTLQSLHILPQQSTRPGPPQPVK
HNLNPTFKASLRQAITGGGTSGSFGILAENDDKHPPPDIEALDAFALERWETILYYMVSS
GTGQFPAKPSQGVLYLLQRSGLMATVHGATLQITSAGFQFLLHPPHEQLWELLLQYLQMA
EERQMDLVEVLSFLLMLSTTELGKVGVHTIQFIAQVTQAIPHAQSYSTENLSATQKAMLE
DLRDYGLIRQRTATSRKFSPTRLATTLTSSSPPLPTSAGTGDGSHVQGFIVLETNYRLYA
YTDNPLQIAVLNLFVTLKYRFPNLVVGQITRDSVKKALANGITADQIISYLITHAHPQMR
KNKPLLPVTVQDQIRLWELERNRVKSQEGYLYTAFASHADYEWVLDYAKKLGVVLWENPS
KRCFFGSVEGHMNIRGYIERRSAGNA
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggtgggcccgtccatccgcatcagacctgcaggagagtcttccaaagcctccatggtg
gatggcggggagacatcacatcgcctcattggcttcctgttatcccaaccacagtctacc
atgaacaggctctatcagaagccttcttcgtgcttgtcaatctttaggttactccagccc
ttggaacgacaaattgtgatgaacctactatggctcgaaactccgattccaggagcaacc
atggcagcgtgggtcactcgggaaggcaaacggccgtatcaggaagctttgtctacttta
cagagtctccacatcttaccccaacaatcgacaaggccaggacctccgcagcctgtgaag
cacaatctcaatcccaccttcaaagcgagcttgcgacaagccatcacaggaggcgggaca
agcggcagtttcggtatactcgccgaaaacgacgacaaacatccccctccagatatagaa
gctttagatgcatttgcgctggaacgctgggagaccattctgtactacatggtctcttcg
ggtacgggccagttccctgccaaaccatcacaaggggtgctatacttgctccagcgcagc
ggccttatggccaccgtacatggcgctactttgcaaatcacatccgcggggttccaattc
ctccttcacccaccgcatgagcaactatgggaactgctcctgcagtaccttcagatggca
gaggaaagacagatggaccttgtagaggtcctcagcttcctgttgatgttgtccaccacc
gaacttggcaaggttggagtacacaccattcaattcattgcgcaagtcactcaagctata
ccacatgctcagagctattccacggaaaacctgagtgccactcaaaaagcaatgctcgaa
gatctgcgggactatggtctgatcagacaacgcacggcgacgtctaggaagttcagtccg
accagactagcaactacactgacgtcttcgtcaccaccacttcccacgtccgccggcacg
ggagacggatcgcatgttcaggggttcatcgtcctcgagaccaactaccgcctttacgca
tacacggataatccactccaaatcgccgtcttgaacctcttcgtaacgctcaagtatcga
ttccccaatctagtggtgggccagattactcgtgacagcgtcaagaaagcactcgcgaat
ggcatcactgccgaccagatcatcagttatctcatcacgcacgcccacccccaaatgcgc
aagaataaaccccttcttccagtcactgtgcaggaccaaatccgcctgtgggaacttgag
agaaaccgtgtgaagtcgcaagaaggatatttgtatacggccttcgcttcacatgccgac
tacgagtgggtcctcgactacgcgaagaaactcggtgtcgtgttatgggagaacccctcg
aaacggtgtttcttcggcagcgttgaagggcacatgaatattcgagggtacatcgagcga
cggtcggcagggaatgcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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