KEGG   Dichomitus squalens: DICSQDRAFT_72793
Entry
DICSQDRAFT_72793  CDS       T03133                                 
Name
(RefSeq) hypothetical protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
dsq  Dichomitus squalens
Pathway
dsq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DICSQDRAFT_72793
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsq03019]
    DICSQDRAFT_72793
Enzymes [BR:dsq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     DICSQDRAFT_72793
Messenger RNA biogenesis [BR:dsq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     DICSQDRAFT_72793
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     DICSQDRAFT_72793
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1
Other DBs
NCBI-GeneID: 18843906
NCBI-ProteinID: XP_007371447
JGI: 72793
UniProt: R7SIY6
Position
Unknown
AA seq 649 aa
MTPHWQQQLLKCEMIRASRSPHHRARASAMAARTVQKAAIPITNPNAIKPPETNGIAKDG
DSSFTSSPSAKSQAASDLSPITASALANQPSATVPPVAELPRPIAPKPGNTWQSLDMGGV
GIKNIPPTSGLFAFTFLTNLYLNHNALSAVPPQIAKLRHLELLDLSGNGLMSIPPELGML
TSLKELYLFDNHLQTLPPELGTLHQLQTLGIEGNPLEPSLKQIVQKDGTPALISYLRDSC
PIPAPPPDRAWKHFVGQAEREAMANDPTAETFTVLCYNILCERCATERLYGYTPSWALQW
DYRKELILTEVLQHNADFLCLQEVDNAQYEEYFSKQLAEHGYEGAHWPKSRYKMMSENER
RMVDGSAIFYKASKYSLVEKHLIEFSTVAMQRPDFKKTDDMFNRVLGKDHIAVVCLLENK
ETGTRLIVANTHLHWDPAFSDVKLVQTALLIEEVEKIAQNFARYPPRLPPTPSSATSSAT
NPSIGETNGSARPPPVYTDAYKIPIVVCGDLNSNPTSGVYEFLSTGSLPPDHEDFLSHTY
GKYTTEGLRHRLGLKSAYAGIGELSMTNYTPTFKGTLDYIWYTTANLAVNSVLGEVDQGY
LDKVVGFPNAHFPSDHLCLVSEFRVRPPREAQPARPPPVFPESSSRAHN
NT seq 1950 nt   +upstreamnt  +downstreamnt
atgactccccattggcagcagcaattgctcaagtgcgagatgattcgtgcatcaagatct
ccgcaccatcgagctagagcaagcgccatggccgcgcgtacagttcagaaagctgcgatc
cctatcacaaatcccaacgcgatcaagcctccggagacgaatggtattgccaaggatgga
gattcttcttttacctcttcgccttcagccaaatcccaggcggcctcggatttgtccccc
attactgcgagcgccctagcgaaccaaccgtctgcgaccgtaccgcccgtagccgagctt
cctcgtccaatagctcccaaacccggcaacacatggcagtcactggacatgggaggtgtg
ggcatcaagaacatccctccaacgtccgggcttttcgccttcacatttcttaccaacctc
tatctcaatcacaacgccctctccgccgttcccccgcagatagcgaagctccgtcatctc
gaactcctggatctatctgggaatggtctcatgagcattcccccggagctcgggatgttg
acctcgctcaaggagttgtacctattcgacaaccatctgcagactttacccccggaactc
ggcacgctccatcaactacaaacgcttgggattgaggggaacccattggagccatcgttg
aagcagattgtgcagaaggacggtacgcccgcgcttatctcgtacctccgcgattcgtgt
cccatccccgcaccacctcccgaccgcgcgtggaaacactttgtgggccaggcggagcga
gaggccatggccaatgatccgacggcggaaacgttcacggttctgtgctacaacatcctc
tgcgagcggtgcgcgacggagcggctctacgggtacacgccctcgtgggcgctgcagtgg
gactaccggaaggagctcattctcaccgaggtcctccagcacaatgcggacttcctgtgc
ctgcaggaggtggacaatgctcagtacgaggagtacttctcgaagcagctcgcggagcac
ggctacgagggcgcccactggccgaagtcgcggtataagatgatgagcgagaatgagcgg
cggatggttgatgggagtgctatattctacaaggcgtcgaagtactcgcttgtggagaag
cacctcatcgagttcagcacggtggcgatgcaacggccggacttcaagaagacggacgac
atgttcaaccgcgtgctcggcaaggaccatatcgcggtcgtgtgtctgctcgagaacaag
gagactgggacgcggctcatcgtcgcgaacacgcatttgcactgggacccggcgttcagc
gacgtcaaactcgtgcagaccgcgttgctcatcgaggaggtggagaagatcgcgcagaac
ttcgcgaggtatcctccgcgtcttcctcccaccccctcgtcagccacgtcttcggcgacc
aacccttctataggcgagaccaacgggtcagcgcgccctccaccagtgtacacggacgcg
tacaagatccctatcgtcgtctgcggcgacttgaattcgaatccaactagcggagtgtac
gagttcctgtcgacgggctccctccctcccgaccacgaggacttcctgtcgcacacatac
ggcaagtacacgaccgagggcctgcggcaccgtctgggcctcaagagcgcgtatgcgggc
atcggcgagctgtcgatgacgaactacacgccgacgttcaagggcacgctcgactacatc
tggtacacgacggcgaacctcgccgtgaattcggtccttggggaggtcgaccagggctat
ctggacaaggttgtcggcttccccaacgcccacttcccgtcagatcacttgtgtctcgtc
tccgagttccgcgtccgtccgcctcgggaagctcagcctgctcgcccaccgcccgtcttc
ccagagtcgtcctcgcgcgcgcacaattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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