KEGG   Candidatus Desulfovibrio trichonymphae: RSDT_0214
Entry
RSDT_0214         CDS       T05578                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dtr  Candidatus Desulfovibrio trichonymphae
Pathway
dtr03030  DNA replication
dtr03410  Base excision repair
dtr03420  Nucleotide excision repair
dtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RSDT_0214 (ligA)
   03410 Base excision repair
    RSDT_0214 (ligA)
   03420 Nucleotide excision repair
    RSDT_0214 (ligA)
   03430 Mismatch repair
    RSDT_0214 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dtr03032]
    RSDT_0214 (ligA)
   03400 DNA repair and recombination proteins [BR:dtr03400]
    RSDT_0214 (ligA)
Enzymes [BR:dtr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RSDT_0214 (ligA)
DNA replication proteins [BR:dtr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RSDT_0214 (ligA)
DNA repair and recombination proteins [BR:dtr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RSDT_0214 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RSDT_0214 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     RSDT_0214 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RSDT_0214 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 DNA_ligase_ZBD BRCT HHH PTCB-BRCT Zn_ribbon_SprT Zn_Tnp_IS1595 zf-tcix
Other DBs
NCBI-ProteinID: BAV91726
UniProt: A0A1J1DXA5
Position
complement(277797..279878)
AA seq 693 aa
MSHPKNQPGAPEQHDSLSEQPAAGARSRVERLTADLERHNYLYHTLDAPEISDDLYDALF
HELQTLERLYPRLRSGYSPTLRVGGGLLDGLTKKNHSRRMYGLENVFSGAELRNFLARMR
RVLPEAPLLFWCDPKLDGLALEIIYENGVLTEALTRGDGASGEMVTDAVRTIQTVPLRLA
GAGPFPELLEVRGEVIIFKKDFAALNERQEALGRKQFANPRNAAAGAVRQLNIAVAESRP
LRFLAYSLGSVIWSPAPASGRQHDVMERLATWGFLTPPEGKLCAGVGEVETYADFVRERR
PQFTMEIDGIVIKQDSLEAQEALGFTARAPRFAVAYKFPASQVETLLRRIDVQTGRTGVL
TPVAVLEPVSVGGVMVSRATLHNEDEICRRDVREGDTVIVQRAGDVIPEVVGPVPGKRRA
GSRAYVFPHVCPACGETAHRETGEAAWRCGNLSCPAVRLLRVVHFVSKAGLDIQGIGQKR
IGQFVGAGIVQSPADLFVLTVEALLHFERMGEILAKKIVSAFDEARLSATLPRLISALGI
RHVGGQTARLLAGRYRTLDELGRADAETLQSLPDVGPEVAASIRNFFDSPTNRALLVRFR
ELGLWPQGATSASGENALRGKSVLFTGSLSLPRARALELAEAAGAVPASSMSKKLDYLVV
GEKPGGKLAKADSLGVAVLDETAFMALLASAGL
NT seq 2082 nt   +upstreamnt  +downstreamnt
atgtcgcatccaaaaaatcagccgggcgcgccggaacaacacgattccctttctgaacag
cctgccgccggggcgcgctcacgcgtggaacggctgaccgcggatctggaacgccacaat
tatctgtaccacacgctggacgcgccggaaatcagcgatgacctatacgacgccctgttt
catgagctgcagacgcttgagcgcctgtatccccgcctgcgcagcgggtactcgcccacc
ttgcgcgtgggcggcggacttctggacggcttgacgaaaaaaaaccacagccgtcgtatg
tacggtctggaaaatgttttttccggcgcggaactgcggaattttctggcccgcatgcgg
cgagtcctgcccgaagcccctctgcttttctggtgcgatcccaagctggacggactggct
ctggaaatcatttatgaaaacggcgtgctgacggaagcgctgaccaggggggacggcgca
agcggcgaaatggtcaccgacgccgtgcggactatccaaaccgtccccttgcggcttgcc
ggcgcggggccttttccggaacttctggaagtgcgcggcgaagtgatcatttttaaaaag
gatttcgcagccctgaacgaacggcaggaggccctcggccggaagcaattcgccaacccg
cgaaacgcagccgcgggtgcggtgcgtcagttgaatatcgccgtcgcggaatcccgccct
ttgcgttttctcgcttacagtctcggcagcgtcatctggtcacccgcgccggccagcggg
cggcagcacgacgttatggaacgccttgcgacctggggttttttgacgccgccggaaggc
aaactctgtgccggcgtgggtgaggtggaaacatatgcggactttgtgcgtgaacgcagg
ccgcaatttaccatggagattgacggcattgtgatcaagcaggacagtctggaggcccag
gaggctttgggcttcacggcccgcgcgccgcgttttgccgtggcatataaattcccggcc
agtcaggtggaaactctgctcaggcgtattgacgtacagacagggcgcaccggcgtgctc
acacctgtggccgtgcttgagcctgtgtctgtgggcggtgtcatggtttcccgcgccaca
ctgcacaatgaagatgaaatttgccggcgcgatgtgcgtgagggagatacggtcattgtg
cagcgggccggcgacgtcatccccgaagtggtggggccggtgccgggcaaaaggcgggcg
gggtccagggcgtatgtgtttccccatgtctgtccggcttgcggggaaacggcgcacaga
gagaccggcgaagcggcctggcgttgcggcaatctttcctgcccggcggttcgtttgctg
cgtgtcgtccattttgtgtccaaagccggtctggatattcagggcatagggcaaaaacgg
attggacagtttgtaggggcgggcattgtgcagtccccggcggatctgtttgtgctgacg
gttgaagctttgcttcattttgaacgcatgggcgaaattttggcaaaaaaaattgtgtcc
gcttttgacgaggcgcggctttcggcgacattgccgcgtttgatcagcgctctcggcatc
cgccatgtgggcgggcagacagcgcgtttgctggccgggcgctatcgcacgctggacgag
ttgggccgggctgatgcggaaaccttgcaatccctgcctgatgtcggtccggaagtggcg
gcgtccatccgcaatttttttgacagtccgacgaatcgcgccctcctggtccgttttcgc
gagctggggctctggccgcaaggcgcaacgtctgcgtccggcgaaaacgcgctgcggggc
aaaagcgtgctgtttaccggcagcctctcgcttccgcgtgccagagctttagagttggcg
gaggcggcaggcgccgttcccgcaagcagcatgagtaaaaaactggattatctggtggtc
ggggagaagccgggcggcaaactggcaaaagccgattcgttgggcgttgctgtgcttgac
gagacggcatttatggcattgctcgcttctgcgggcctataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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