KEGG   Dictyoglomus turgidum: Dtur_0780Help
Entry
Dtur_0780         CDS       T00800                                 

Definition
(RefSeq) ATP-dependent DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dtu  Dictyoglomus turgidum
Pathway
dtu03030  DNA replication
dtu03410  Base excision repair
dtu03420  Nucleotide excision repair
dtu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dtu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Dtur_0780
   03410 Base excision repair
    Dtur_0780
   03420 Nucleotide excision repair
    Dtur_0780
   03430 Mismatch repair
    Dtur_0780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dtu03032]
    Dtur_0780
   03400 DNA repair and recombination proteins [BR:dtu03400]
    Dtur_0780
Enzymes [BR:dtu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Dtur_0780
    6.5.1.6  DNA ligase (ATP or NAD+)
     Dtur_0780
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Dtur_0780
DNA replication proteins [BR:dtu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Dtur_0780
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Dtur_0780
DNA repair and recombination proteins [BR:dtu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Dtur_0780
   NER (nucleotide excision repair)
    Other NER factors
     Dtur_0780
   MMR (mismatch excision repair)
    Other MMR factors
     Dtur_0780
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 7082068
NCBI-ProteinID: YP_002352675
UniProt: B8DZX8
Position
794120..795868
Genome map
AA seq 582 aa AA seqDB search
MLFGELAQYFEKIEKTTKRNEMMEILADLFKRVDKEEIEKIIYLLNGRVAPDYEKIEFGM
SEKLVLRAMALALKVPIFDLEKVYKEVGDLGELIIKYSQNEGKDLTVVETFNTLFEIANL
SGEGSVDAKVNRLAFLINSLTPQGGKYLVRIVLGKLRLGVGEPTVMDALSFAKVKDKSLR
PFIERAFNITSDLGYVAKVFWEGGIEALKKIKVEVGKPIRMALAERVSKVEEIVKRLGKC
AIEPKFDGFRCQIHKKENNVRIFSRNLEDNTHMFPDLVEAVLKQFSDKNVIIEGEAISYN
PETGEFYPFQVTVQRKRKYNISEMVELYPLQLFAFDILYLNGEDITSLPYIRRRQKLEEA
ISEGEKIFVTKNIITNDPKEIQAFFEECITEGLEGIVAKRLDAPYQAGIRNFNWIKLKRS
YQGHLADTVDCVILGYFKGRGHRAKFGIGALLVGVYDDERDLFKTVAKIGTGPTEEEWVR
FREVLDEIKLESKPNNVESLIEPDVWVEPKYVVVIQADEITRSPVHTCGRELDGLGYALR
FPRVIGFVREDKGPYDATTVKEILEMFRGQKKEKVEEDSDNL
NT seq 1749 nt NT seq  +upstreamnt  +downstreamnt
atgctttttggagaacttgctcaatattttgaaaaaatagagaaaactactaaaagaaat
gagatgatggagattcttgctgatctttttaagagagttgataaagaggaaattgaaaag
atcatttatttgttaaatggtagagttgcacctgattatgaaaagattgagtttggaatg
tctgagaagttagttttaagagccatggctttagctttaaaagttcctatatttgacctt
gagaaagtgtataaagaagtgggggatttaggggaattaataatcaagtattcccaaaat
gagggaaaggacttaacagtggttgagacctttaacactctgtttgaaattgcaaatttg
tctggagagggaagtgtggatgctaaagtaaacagacttgcttttttgataaactctttg
actcctcaaggtgggaagtatttggtgagaattgttttaggaaaattaaggcttggtgtt
ggagagccaacggttatggatgctctatcttttgcaaaggtgaaagataagagtttaaga
cctttcattgaaagagcttttaatattacttctgatttgggatatgtggcaaaggttttt
tgggaagggggaatcgaagctttaaagaagattaaagtagaagtaggaaaacctataaga
atggctttagcagagagggtttcaaaggtagaggaaattgtaaagaggttaggaaaatgt
gctatagagccaaaatttgacggttttagatgtcagattcataaaaaagaaaataatgtg
agaattttttcaagaaacttagaggacaacacccacatgtttcctgatcttgtggaggct
gtattaaagcagttttctgataaaaatgttattatagaaggagaggctatttcgtataat
cctgaaacaggggagttttatccttttcaggtcacagtgcaaagaaagagaaaatacaat
atctctgaaatggtagaactttatcctttacagctttttgcctttgatattttgtatctg
aatggcgaagacattacttcacttccttatataagaagaaggcaaaaattagaagaggct
atctcagaaggagaaaagatatttgttacaaaaaacatcattactaatgatcctaaggaa
attcaagccttttttgaggaatgtattaccgaaggattagaaggcatagtcgcaaaaaga
ttagatgctccttatcaagcagggattagaaattttaattggattaaattgaagagatcc
tatcaaggacatttagcggatactgtagattgtgtgattttgggatattttaaaggaagg
ggacatagggctaaatttggtataggtgctcttcttgtaggagtttatgatgatgaaagg
gatctctttaaaaccgtagccaagataggtacaggaccaaccgaggaagagtgggtaaga
tttagagaagtacttgatgaaataaaactggagagtaagcctaacaatgtagaatcatta
attgaacctgatgtttgggtagaaccaaagtatgtagtggttattcaagcagatgagata
accagaagtcctgtacatacttgtggtagagaattagatgggttaggctatgctttaaga
tttcccagggtaattggttttgtaagggaagataaaggtccttatgatgctactaccgta
aaagagatattggaaatgtttaggggtcagaagaaagagaaggttgaggaagattctgat
aatttgtag

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