KEGG   Dyella thiooxydans: ATSB10_08950
Entry
ATSB10_08950      CDS       T04308                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dtx  Dyella thiooxydans
Pathway
dtx03030  DNA replication
dtx03410  Base excision repair
dtx03420  Nucleotide excision repair
dtx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dtx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ATSB10_08950
   03410 Base excision repair
    ATSB10_08950
   03420 Nucleotide excision repair
    ATSB10_08950
   03430 Mismatch repair
    ATSB10_08950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dtx03032]
    ATSB10_08950
   03400 DNA repair and recombination proteins [BR:dtx03400]
    ATSB10_08950
Enzymes [BR:dtx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ATSB10_08950
DNA replication proteins [BR:dtx03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ATSB10_08950
DNA repair and recombination proteins [BR:dtx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ATSB10_08950
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ATSB10_08950
   MMR (mismatch excision repair)
    DNA ligase
     ATSB10_08950
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ATSB10_08950
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5
Other DBs
NCBI-ProteinID: AND68349
UniProt: A0A169GQ89
Position
945955..948339
AA seq 794 aa
MTVPHDIAARAAALREQIEQANYQYHVLDDPTIPDAEYDRLMRELEALEAQYPALASPDS
PTRKVGARATGGFAEVRHAIPMLSLGNAFSEEGDTDRDRFHEVAEFERRIEQTLDRRDPV
FSVEPKLDGLAISLRYEHGVFVQGATRGDGETGEDVTANLRTVRAIPLRLRGADWPEVLE
VRGEVIMLRRDFEAFNEHARSYGEKTLANPRNGAAGSLRQLDPAITQKRRLSFFAYAVGV
VEDGELPPTHSQTLQKLRDWGFPVSPEVSTATGFDGLIAYYRAIGAKRDALPYDIDGVVY
KLDDYDGQRIMGFVSRAPRWAIAHKFPAQEQMTRVEAIEIQIGRTGAATPVARLAPVQVA
GVTVTNATLHNADQVARLDVRVGDMVIVRRAGDVIPEVVRVVEEHRPAHTHPWHMPAHCP
VCGSALVREEGAAAYRCSGGLFCAAQRKEALIHFAARRAMDIDGLGERYVDALVEFDMVR
TPADLYALTVDDFVAMKQRADERDGTVPETVKQGKIATRWAENLVEAIDASRTTTLARFL
FALGIMHIGESTAKTLAAWLGRLEFVRSMPAPVLRVLPDIGAEVAGSIAAFFAQKGNQQV
VDALLAAGVHFTDEGEPSPKLRERLDLGVLLDIANVSKLGPKSTKLLAAQYATLEALEQA
GSAHWIVAGVPQAAAINLEAMLADRHHRHAFARAEQAMRHLLAAIPEGAAGDEAPLAGQT
VVLTGTMPSLSRDQAKDLLESLGANVAGSVSKKTSFVVAGEAAGSKLDKANELGVPVWDE
AQLLALLAEHGVAP
NT seq 2385 nt   +upstreamnt  +downstreamnt
atgaccgttccccacgacatcgccgcccgtgccgccgccctgcgcgaacagatcgagcag
gcgaactaccagtaccacgtgctggacgatccgacgatcccggacgccgagtacgaccgc
ctgatgcgcgaactggaggcgctggaagcgcagtacccggcgctggcttcgcccgattcg
cccacccgcaaggtcggggcccgcgccaccggcggcttcgccgaggtgcgtcatgccatc
ccgatgctgtcgctgggcaacgccttcagcgaggagggcgacaccgaccgcgatcgcttc
catgaagtggccgagttcgagcggcgcatcgagcagacgctggaccgccgcgatccggtg
ttctcggtcgagcccaagctggacggcctggcgatcagcctgcgctacgagcacggcgtg
ttcgtgcagggcgcgacccgcggcgacggcgagaccggcgaggacgtcaccgccaacctg
cgcacggtgcgcgcgatcccgctccgcctgcgcggtgccgactggcccgaggtgctggag
gtgcgcggcgaagtgatcatgctgcgcagggacttcgaggccttcaacgaacacgcccgc
agctacggcgaaaagaccctggccaacccgcgcaacggcgcggccggttcgctgcgccag
ctcgatccggcgatcacgcagaagcgacggctgagcttcttcgcctacgccgtcggcgtg
gtcgaggacggcgagctgccgccgacccactcgcagacgctgcagaagctgcgtgactgg
ggcttcccggtgtcgccggaggtgtccaccgccaccggcttcgacggtctgatcgcctac
taccgcgcgatcggtgccaagcgcgatgcgctgccgtacgacatcgacggcgtggtctac
aagctggacgattacgacggccagcgcatcatgggcttcgtctcgcgcgcgccgcgctgg
gcgatcgcgcacaagttcccggcgcaggagcagatgacccgggtcgaggcgatcgagatc
cagatcggccgcaccggcgcggccaccccggtggcgcggctggcgccggtgcaggtggcc
ggcgtgacggtgaccaacgccacgttgcacaacgccgaccaggtggcgcggctcgacgtg
cgcgtcggcgacatggtgatcgtgcgccgcgccggcgacgtgattcccgaggtggtgcgc
gtggtcgaagagcatcggccggcacacacccatccctggcacatgccggcgcattgcccg
gtgtgcggttcggcgctggtgcgcgaggagggcgccgccgcctaccgctgctccggcggc
ttgttctgcgccgcgcagcgcaaggaggcgctgatccatttcgccgcgcgccgcgctatg
gacatcgacggcctgggcgagcgctacgtcgacgcgctggtcgagttcgacatggtcagg
acgccggccgacctctacgcgctgaccgtggacgatttcgttgccatgaagcagcgtgcc
gacgagcgcgacggcacggttcccgagaccgtcaagcagggcaagatcgccaccaggtgg
gcggagaatctggtcgaggcgatcgacgccagccgcaccactacgctggcgcgcttcctg
ttcgcgctgggcatcatgcacatcggcgagagcacggccaagacgctggcggcctggctc
ggccgcctggagttcgtgcgcagcatgccggcaccggtgttgcgggtgctgccggacatc
ggcgccgaggtggccggttccatcgccgcgttcttcgcgcagaagggcaaccagcaggtg
gtcgatgcgctgctggccgccggcgtgcatttcaccgacgaaggcgaaccgtcgccgaag
ctgcgcgagcggctggacctcggcgtgctgctggacatcgccaacgtgtccaagctcggc
ccgaagagcacgaaactcctggccgcgcagtacgccacgctggaggcgctggagcaggcc
ggttcggcgcactggatcgtcgccggcgtgccgcaggccgcggcgatcaacctggaggcg
atgctggccgatcgtcaccatcgccatgccttcgcccgggctgaacaggccatgcggcac
ctgctcgctgcgataccggaaggtgccgccggcgacgaggcacccctggccggacagacc
gtggtgctcaccggcacgatgccttcgctcagccgcgatcaggcgaaagaccttctggaa
tccctgggggccaacgtcgccggctcggtctccaagaagaccagcttcgtggtggctggc
gaagcggccggctccaagctcgacaaggcgaacgagctgggcgtgccggtatgggacgag
gcgcaattgctggcgctgctggccgaacatggggtcgcgccatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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