KEGG   Duganella dendranthematis: HH213_07915
Entry
HH213_07915       CDS       T06560                                 
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
  KO
K00970  poly(A) polymerase [EC:2.7.7.19]
Organism
dug  Duganella dendranthematis
Pathway
dug03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dug00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HH213_07915 (pcnB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dug03019]
    HH213_07915 (pcnB)
Enzymes [BR:dug01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     HH213_07915 (pcnB)
Messenger RNA biogenesis [BR:dug03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     HH213_07915 (pcnB)
SSDB
Motif
Pfam: PolyA_pol_arg_C PolyA_pol PolyA_pol_RNAbd DUF2204
Other DBs
NCBI-ProteinID: QJD90026
Position
1703940..1705385
AA seq 481 aa
MIKKLIRKILGTKSKAVRDTNTPVVLGPEAHGIDPRLLSNNAIRVTSSLQEAGYEAFVVG
GAVRDLLLGVKPKDFDIATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQDLLEVTTFRGT
TSDSAPKDEHGRVLRDNTFGSQAEDAERRDFTINAMYYNPANQQVLDYHGGIEDIRAKTL
RIIGVPEARYREDPVRMLRVVRFAAKLKFSIEPETGAPIKVMAPLINNVPAARVFDEMLK
LLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGVKFVTLALDSTDSRIHAGKTVSPG
FLFASLLWHQVLEKWTAYRAAGEQTIPALHLAADDVLDSQTEKLALQRKIGTDMRDIWSM
QPRFERRTGKAPHKLLEHLRFRAGYDFLLLRCASGEIDAEIGDWWTAFYEGDEITREELI
ASARAPREGESGGGAGGGSTGGPAKRKRGPRRGGRNRSGRGEGGDGGEGGSDAPARDGGA
E
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgattaagaaactgatccgcaaaatcctcggcaccaagagtaaagcggtccgcgacacg
aacaccccggtggtgctggggcccgaagcccacggcatcgatccgcgcctgctgtccaac
aacgccatccgcgtcaccagcagcctgcaggaagccggctacgaagcctttgtggtcggc
ggcgccgtgcgcgacctgctgctgggcgtcaagccgaaagacttcgacatcgccaccaac
gccacgccggagcaggtcaagcggctgttccgccgcgccttcatcatcggcaagcgcttc
cagatcgtgcacgtgatgttcggccaggacctgctggaggtgaccaccttccgcggcacc
acctcggacagcgcgccgaaggatgaacatggccgcgtcctgcgcgacaacaccttcggc
tcgcaggcggaagacgcggaacgccgcgacttcaccatcaacgccatgtactacaacccg
gccaaccagcaggtgctggactaccacggcggcattgaagacatccgcgccaagacgctg
cgcatcatcggcgtaccggaagcgcgctaccgcgaagacccggtgcgcatgctgcgcgtg
gtgcgctttgccgccaagctgaaattcagcatcgagccggaaaccggcgcgccgatcaag
gtcatggcgccgctgatcaacaacgtgccggccgcgcgcgtgttcgacgaaatgctcaag
ctcttgatgagcggccacgcattggcctgtttgcagcagctgcgcaaggaaggcctgcat
cacggcctgctgccgctgctcgacgtggtgctggaacagccgctgggcgtcaagttcgtg
acgctggcgctggactcgaccgactcgcgcatccacgccggcaagaccgtctcgccgggc
ttcctgtttgcgtcgctgctgtggcaccaggtgctggaaaagtggaccgcctaccgcgca
gccggcgaacagaccattccggcgctgcacctggcggccgacgatgtactcgattcgcag
accgaaaagctggccttgcagcgcaagatcggcaccgacatgcgcgacatctggtcgatg
cagccgcgcttcgagcgccgcaccggcaaggcgccgcacaagctgctggaacacctgcgc
ttccgcgccggttacgacttcctgctgctgcgttgcgcctccggcgaaatcgacgccgaa
atcggcgactggtggactgcgttctacgaaggcgacgagatcacccgcgaagaactgatc
gcctccgcccgcgcaccgcgcgagggtgaaagcggcggcggcgctggtggcggcagtact
ggcggcccggccaaacgcaaacgcggcccgcgccgtggtggacgcaaccgcagcggccgt
ggtgagggcggcgacggcggcgaaggtggtagcgacgctcctgcgcgcgacggcggcgcc
gagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system