KEGG   Nitratidesulfovibrio vulgaris DP4: Dvul_0321
Entry
Dvul_0321         CDS       T00452                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
dvl  Nitratidesulfovibrio vulgaris DP4
Pathway
dvl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dvl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dvul_0321
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dvl03019]
    Dvul_0321
   03009 Ribosome biogenesis [BR:dvl03009]
    Dvul_0321
Enzymes [BR:dvl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Dvul_0321
Messenger RNA biogenesis [BR:dvl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Dvul_0321
Ribosome biogenesis [BR:dvl03009]
 Prokaryotic type
  rRNA processing factors
   Dvul_0321
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ABM27344
UniProt: A0A0H3A4F1
Position
complement(409313..410782)
AA seq 489 aa
MTTAKKGKRKMYISVLPGEQVEVALSEDGAVTEYYVEMLHQAKTKGNIYKGVINNIDTNL
QAAFVNYGAEKNGFLQIDEVHPEYYISPHDPNKGKKYPLMQKVLKAGQEVLVQVVKEPTG
NKGAFLTSYLSLPGRFLVLTPGREQIGVSRKVEDDEERSRLREMLEGLSAGPGLGVIVRT
VSAGTSKTTLQRDLQFLKRLWKDVRKKGTTEQTPCQIYQEPDLATRSVRDYLTDDVSEVW
VDDAATAELIREFVTLVFPRKASLVKLHTDPERTLWERFGIRKQLDQIYSREVILPSGGR
LVFDQTEALMAIDINSGKIAGKTNFESMALKTNTEAAESIAQQLRLRDIGGQVVIDFIEM
RDHNHWREVEKTLRNAMKGDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCRGS
GLRRNMEWQSLQALRELHRQLRALPQGQCVHVFETSPELAFYLLNHKRERLLELERRFNL
RLEVRPTGK
NT seq 1470 nt   +upstreamnt  +downstreamnt
atgacaacagcaaagaagggcaagcgcaagatgtacatcagcgtgctgcccggagaacag
gtcgaagtggccctctccgaggacggcgccgtcacggaatactacgtggagatgctgcat
caggccaagaccaagggcaacatctacaagggtgtcatcaacaacatcgacaccaacctg
caagccgccttcgtcaactatggtgccgagaagaacggctttctccagatagacgaggtg
caccccgaatactacatctcgccgcacgaccccaacaagggcaagaagtatccgctcatg
cagaaggtgctgaaggccggacaggaggtgcttgtgcaggtggtgaaggaacccaccggg
aacaagggcgcctttctcacatcgtatctttcgctgccggggcgctttctcgtgctcacg
ccggggcgcgagcagattggcgtctcccgcaaggtcgaggacgacgaggaacgcagccgc
ctgcgcgagatgcttgagggtctcagcgccgggccgggccttggcgtcatcgtccgcacc
gtgagtgccggtaccagcaagacgaccctgcagcgcgacctgcaattcctcaagcgcctg
tggaaagacgtccgcaagaagggcaccaccgagcagaccccttgccagatttatcaggag
cccgacctcgccacccgttcggtgcgcgactacctcaccgacgacgtgtccgaggtatgg
gtcgacgacgcggccacggccgaactcatccgcgaattcgtcacgctggtgttcccccgc
aaggccagcctcgtgaaactgcataccgaccccgaacgcaccctgtgggaacggttcggc
atccggaagcaactcgaccagatatactcgcgcgaggtcatcctgccttcgggcgggcgt
ctcgtcttcgaccagaccgaagcgctcatggccatcgacatcaactccggcaagatcgcg
ggcaagaccaacttcgagtccatggccctcaagaccaataccgaagccgcagaatccatc
gcccagcagttgcgcctgcgcgacatcggcgggcaggtggtgatcgacttcatcgagatg
cgcgaccacaaccactggcgcgaggtcgaaaagaccctgcgcaacgccatgaagggcgac
cgcgcccggcatgacgtgggcaagatgagccgcttcggcctgctgcaggtggtgcgccag
cgcacgggctcgtcggcgctctccatcaccatggaggcgtgcccctgctgccgcgggtcg
ggcctgcgccgcaacatggagtggcagtcgcttcaggcattgcgcgaactgcaccgccag
ttgcgtgccctgcctcagggacagtgcgtgcatgtgttcgagacatcaccggaactggcc
ttctacctcctcaaccacaagcgcgaacggctgctcgaactcgagcgccgcttcaacctg
cgtcttgaggtgaggcccaccggaaagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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