KEGG   Dysgonomonas sp. HDW5A: G7050_09265
Entry
G7050_09265       CDS       T06482                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
dys  Dysgonomonas sp. HDW5A
Pathway
dys03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dys00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    G7050_09265 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dys03019]
    G7050_09265 (rnr)
   03016 Transfer RNA biogenesis [BR:dys03016]
    G7050_09265 (rnr)
Enzymes [BR:dys01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     G7050_09265 (rnr)
Messenger RNA biogenesis [BR:dys03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     G7050_09265 (rnr)
Transfer RNA biogenesis [BR:dys03016]
 Prokaryotic type
  tRNA degradation factors
   G7050_09265 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 LPD3
Other DBs
NCBI-ProteinID: QIK60010
UniProt: A0A6G7X5X0
Position
2245724..2247871
AA seq 715 aa
MSKDKIPQKTTPRRKKSDIIAATVSFFNNNTSNSYNYKQIGAEIGIKKQPERLMLMTVLE
DLVEDAFIIETSKGKYKSNTRGVLLDGKFERRSNGKNFFVPEDGSENVFVAERNSAHAMN
GDKVRIQMLAKRKGKSSEGEIIEILERKQTRFVGTLNVQKHFAFLEMDSKILANDIFIPR
EKLMGGKTGDKALVEIVEWPERAKNPVGEVLDILGEAGTNNAEMHAILAEFGLPYKYPEN
VTAEAEKISDVITAEEIAKREDFRSVTTFTIDPRDAKDFDDALSIRQLENGNWEIGVHIA
DVTHYVTPGGIIDKEGEERATSVYLVDRTIPMLPERLSNGLCSLRPNEEKLCYSAIFELN
DNAEIKKYRIGRTVINSDRRFTYEEAQEIIETGEGDFKAEVLKLDELAKKLRAKRFENGA
IGFEREEVRFEIDPDGKPLSVYFKEQKDSNKLIEEFMLLANKTVAEFIGKVPKGKKAKTF
VYRIHDVPNPEKMESLSQFIRRFGYKVKIDGSNSAVAKSINQLLDDVHDKPEENLISTIA
IRAMAKAVYSTSNIGHYGLAFDYYTHFTSPIRRYPDMMVHRLLTLYMEGGRSVSEQQTEN
ECKHCSDMEQLAANAERASIKYKQVEYMSDKIGRVFKAVISGVAEWGVYAEIEENKCEGL
VPMRELDDDFYEFDEKNYCLRGRRSKKEYRLGDEINVKVIRTNLERKQLDFTIVD
NT seq 2148 nt   +upstreamnt  +downstreamnt
atgagtaaagataaaatacctcaaaagaccacacccagaaggaaaaaaagcgatataatt
gctgcaactgtcagctttttcaataataacaccagtaattcttataactacaagcagata
ggagccgaaatcggtatcaagaaacaacccgagcgtttaatgttaatgacggtgcttgaa
gatctggttgaggatgcttttattatagaaacaagtaaagggaaatacaaatcgaacacc
agaggagtacttcttgacggaaaattcgaaagaagaagtaatgggaaaaacttctttgta
cccgaggatggcagcgaaaatgtatttgtagccgaacgcaattcggcacatgccatgaat
ggcgataaagtacgtattcagatgctggcaaagcgtaaaggcaaaagttcggaaggagaa
attatagaaatacttgaaagaaagcaaacccgttttgtgggaacgttgaatgttcaaaag
cattttgcattccttgaaatggatagtaaaattctggcaaatgatatttttatccccaga
gaaaaactgatgggcggtaaaacaggagataaagcactggtggaaattgtagaatggccc
gaacgtgctaaaaatcccgtaggagaagtattagatatacttggagaagcaggaactaat
aatgctgagatgcatgctattttggcggagtttggtttaccctacaagtatcctgagaat
gtaacagctgaggctgaaaaaatatcggatgtaattacagcagaagaaattgctaaacgt
gaagacttccgctcggttactacatttactattgaccctcgtgatgcgaaagactttgat
gatgctctttcgatccgtcaattggagaatggaaactgggaaatcggcgtgcatattgcc
gatgttacgcattatgtaactcccgggggcattattgataaagaaggcgaggagcgtgca
acttcagtttatctggttgaccgtacaattcccatgttacccgaaagattgagtaacgga
ttgtgttcgcttcgacccaatgaagaaaaactttgttattcagccatttttgagttgaat
gataatgctgaaataaagaaatatagaattggacgtaccgttataaattcggacagacgt
tttacttacgaagaagctcaggagattatcgaaaccggcgaaggagacttcaaagccgaa
gttttgaaattggatgagttagccaagaaattacgggcaaaacgcttcgaaaatggagct
attggttttgaacgtgaagaagttcgtttcgagatcgatcctgacggaaaacctttaagt
gtatattttaaagagcaaaaagattctaataaactgattgaagaatttatgttgctggca
aataaaacagtagcagaatttatcggtaaagttcctaaaggaaagaaagcaaagacattt
gtatatcgtatacatgatgtgcctaatcctgagaagatggaaagtctgtctcaatttata
cgtcgctttggctataaagtaaaaatagacggaagtaattcggcggttgcaaaatcaatc
aatcaattgttggatgatgtgcatgacaaacccgaagaaaacctgatatcaacgattgct
atccgtgctatggctaaagctgtatattctacatcgaatataggtcattacggacttgcg
ttcgattattatacgcactttacatcgcccatacgtcgttatccagatatgatggtgcat
cgtttgttgactctttatatggagggtggacgcagtgtgagtgaacaacaaaccgaaaac
gaatgtaagcattgttcggatatggagcaattggctgcaaatgccgaacgtgcttctatc
aaatataaacaagtggaatatatgtcggataaaatcgggcgtgtatttaaggctgtaatt
tcgggtgttgccgaatggggcgtatatgccgaaattgaagaaaacaaatgcgaaggattg
gtacctatgcgtgagctggatgacgatttctacgaatttgatgaaaagaattattgtttg
agaggtcgccgcagtaaaaaagagtatcgtctgggagacgaaatcaatgtgaaagttatt
agaaccaatcttgaaagaaagcaattggacttcactattgtagactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system