KEGG   Dickeya zeae: W909_09560
Entry
W909_09560        CDS       T03567                                 
Name
(GenBank) topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
dzc  Dickeya zeae
Brite
KEGG Orthology (KO) [BR:dzc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dzc03032]
    W909_09560
   03400 DNA repair and recombination proteins [BR:dzc03400]
    W909_09560
Enzymes [BR:dzc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     W909_09560
DNA replication proteins [BR:dzc03032]
 Prokaryotic type
  DNA Topoisomerases
   W909_09560
DNA repair and recombination proteins [BR:dzc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      W909_09560
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom CK_II_beta
Other DBs
NCBI-ProteinID: AJC66294
Position
2103496..2106117
AA seq 873 aa
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSGSASKKGAEGSAEKTKSG
EKAKKAVKKDEKTALVNRMGVDPYHGWQAHYEILPGKEKVVSELKTLAQNADHIYLATDL
DREGEAIAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFEKPGELNINRVNAQQARRFMD
RVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLLANAET
ALQMQVTHHQGKPFRPVNQAQTQAALSLLEKASYVVAEREDKPTSSKPGAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALVMARDYIQSEFGKRYLPDAA
NLYTSKENSQEAHEAIRPSDVKVLADQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTT
LVVSAGDYQLRAKGRTLRFDGWTKVMPALRKSDEDRTLPVVEVGQALSLEKLLPSQHFTK
PPARYSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLED
NFRELMNYDFTARMENSLDLVANSQAEWKAVLDEFFAEFSKQLETAELEPDEGGMKPNQM
VITSIDCPTCSRQMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEAEVLNVLEGDEAE
TNALRARRRCSKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIEHGEFRLKGYDGPVVECE
KCGSEMHLKMGRFGKYMACTNESCGNTRKILRNGEVAPPKEDPVPLPELTCEKSDAYFVL
RDGAAGVFLAANTFPKSRETRAPLVEELVRFRDRLPEKLRYLADAPVTDPEGNKTLVRFS
RKTKQQYVSSEKEGKATGWSAFYVDGKWAEASR
NT seq 2622 nt   +upstreamnt  +downstreamnt
atgggtaaagctctcgttatcgtcgagtccccggcaaaggccaaaacgattaataagtac
cttggcaatgactacgtggtgaagtccagtgtagggcatgtacgtgacttgccgaccagt
ggttcgggttccgcgagcaagaagggcgctgaaggctctgccgagaaaaccaaaagtggt
gagaaagccaagaaagcggtcaaaaaagatgaaaaaaccgcgctggttaatcgcatgggc
gtggatccgtaccatggctggcaagcccattatgagatcctgcccggtaaggagaaagtg
gtctcagagttaaaaacgctggcacagaatgctgaccacatttacctcgcaaccgacctt
gaccgcgaaggggaagccattgcgtggcacctgcgggaaattatcggtggtgatgacaag
cgttttagccgtgtggtgtttaacgaaatcaccaagaatgccattcgccaggcgtttgaa
aaaccaggcgagctgaatatcaaccgtgttaatgcccaacaggcacgccgttttatggat
cgcgtggtggggtacatggtgtcgccgttgctgtggaagaagattgcccgcggattgtct
gccggacgagtgcagtcagtggcggtgcgtctggtcgtcgagcgcgagcgtgaaatcaaa
gcgtttgtgccggaagagtactgggaattgcatgccgacctgctggcgaatgccgagaca
gcattgcagatgcaggtaacgcatcatcagggtaaacccttccgtccggtcaatcaggca
cagacacaggcggcgctcagcctgctggaaaaagccagttatgtggtcgctgaacgggaa
gacaaaccgaccagcagcaaaccgggtgctccttttattacgtctacgctgcaacaagcc
gccagtacccgcctgggctttggcgtgaaaaaaaccatgatgatggcgcagcgactgtat
gaagccggtcacatcacctatatgcgtaccgactccacgaacctgagtcaggatgcgctg
gtgatggcgcgtgattatatccagagtgaatttggtaaacgctatctgccggatgccgct
aacttgtacaccagcaaggaaaattcacaggaagcgcatgaagcgatccgtccttccgat
gtcaaggtactggctgaccagcttaaagacatggaagctgatgcacaaaaactgtatcaa
ctgatttggcggcagttcgtggcgtgtcagatgaccccggcccagtacgactccacgaca
ctggtggtcagtgccggagattatcaactgcgcgccaaggggcgtaccctgcgttttgat
ggctggaccaaagtgatgccggcattgcgcaagagcgatgaagaccggacgttgccagtt
gttgaagtcggacaagcgttgtcgttggaaaaattgttgccaagtcagcattttaccaag
ccaccggcacgttacagtgaggcgtcgctggttaaggaactggaaaagcgcggtatcggc
cgtccttctacctatgcggctatcatttctacgattcaggatcgtggttatgttcgggta
gaaaatcgtcgtttctatgcggaaaaaatgggggaaatcgtcactgaccggctggaagat
aacttccgcgagttgatgaattatgatttcaccgcacgtatggaaaacagccttgatctg
gttgccaacagccaggccgagtggaaagcggtgctggacgaattctttgccgaattcagc
aagcaactggaaaccgccgagttggagccggatgaaggtgggatgaagccgaaccagatg
gtgatcaccagcattgattgcccgacgtgtagtcgtcagatgggcattcgaaccgccagt
accggtgtgtttttggggtgttctggttatgcgttgccgccgaaagagcgctgcaaaact
accattaacctgatcccggaagcagaagtactgaatgtgctggaaggtgatgaggctgag
accaatgcgctgcgtgctcgtcgccgttgttcgaaatgtggtacggcgatggacagttat
ctcatcgacaatcagcgtaaactgcatgtgtgcggtaacaatccatcctgcgatggctat
gagattgaacacggcgaattccggctgaaagggtatgatggccctgtcgttgagtgcgag
aagtgtggttcggaaatgcacctgaaaatggggcgtttcggcaagtacatggcctgtacc
aacgaaagctgcggcaatacccgtaaaattctgcgtaacggtgaagttgcaccgccgaaa
gaagacccggttcctttgccggagctgacgtgtgaaaaatccgacgcgtattttgtgctg
cgcgacggcgctgccggtgtgttcctggcagccaatacgttcccgaaatcacgggaaacc
cgtgcgccattggtggaagagctggtgcgcttccgtgatcgcctgccggaaaagctgcgt
tatctggctgatgcgccggtaaccgacccggaaggcaataaaacgctggtgcggtttagc
cgtaagaccaaacaacagtatgtctcttctgaaaaagaaggaaaggcaacgggatggtcg
gcgttctatgttgacggtaaatgggccgaggcctcgcgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system