KEGG   Durio zibethinus (durian): 111274140
Entry
111274140         CDS       T05242                                 
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF3-like
  KO
K14328  regulator of nonsense transcripts 3
Organism
dzi  Durio zibethinus (durian)
Pathway
dzi03013  Nucleocytoplasmic transport
dzi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dzi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111274140
   03015 mRNA surveillance pathway
    111274140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dzi03019]
    111274140
Messenger RNA biogenesis [BR:dzi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     111274140
   mRNA cycle factors
    P-body specific factors
     111274140
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2
Other DBs
NCBI-GeneID: 111274140
NCBI-ProteinID: XP_022714515
UniProt: A0A6P5WEQ8
Position
Unknown
AA seq 632 aa
MKEPLRRTKVVISHLPPSLTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSQAYINF
KRPEDVLEFAEFFDGHTFVNEKGTQFNAIVEYAPSQCVPKPGTKKDGREGTIFKDPDYLE
FLKLIANPVENLPSAEIQLERKEAELSGASKETPVVTPIMQFVHQKRAAESGTQGSITLR
KVGRKAAASTSKSGSSSKRGSEKTSLTIGLKVFPSSPLSVLPTKGEKTVFSEATSFPYPI
PAKDSESDRPIYYSYPHWLTMNSFLLIQETEKEEICKRYQESPQHCIIKAEILIVVICFW
NQRLEKLSKNGSHNCYILKDSAKGAKKSNFFVASKQEDQSETNVAKEIRENGTVCGIDGP
VTGITFSADSGKKKILLLKPKDREAPHVPEGASEQQGASSPVANSPGSTAPRQSQRREAG
GKLVRSILLSNEVGQNQSSAAVQPQQKTETTSLDNVKRHPRPANMRLGMNGHVSNEMPAL
KSDGDTKRYSYDKFIKKGLYGSGSGSEKHEKRTRNKDRPDRGVWAPLHRSDVSQASEERL
TPSVLQSAQNSHNSIEVIQGEMKGNIPNGSSGPNIPLENGXNGHFSWRPAAHNIKDDGSV
ISTEIKSSKRGGGSSSGAHEKQVWVQKSSSGS
NT seq 1899 nt   +upstreamnt  +downstreamnt
atgaaggagccgttgcgaagaaccaaagtggtgataagccatctgccaccgtcactcacc
caatcatttctcttctctcaaatcgacgatcgtttctctgatcgttacaattggttctcc
ttccgtctcggcaagtccagccataagcatcagaggtactcacaagcctacataaacttc
aagagaccagaagatgtcttagagttcgctgagttctttgatgggcatacatttgttaat
gagaaaggtacccaatttaatgccattgttgaatatgctccttcgcagtgtgtcccaaag
ccaggcactaaaaaggatggtcgtgaaggaaccattttcaaagatcctgattatctggaa
tttctcaaactgattgcgaaccctgttgagaatcttcctagtgctgagattcagttggaa
agaaaagaagcagaactatctggcgcttcaaaagaaacccctgttgttacaccaataatg
caatttgtgcatcagaaacgagctgctgagagtgggactcaggggtcaatcactctaaga
aaggtcggcagaaaagctgccgcatctacaagcaagtctggatcaagtagcaagcgtggc
tctgagaagacaagcttaaccattggattaaaagtttttccatcctcacccctttctgtc
cttcctactaaaggagagaagacagttttcagtgaggcaacttctttcccctatcccata
ccagcaaaagacagtgaatctgaccgcccaatctattattcttatccacactggctaacc
atgaatagcttcctcttaatccaggagactgaaaaagaagaaatttgtaagagatatcag
gaaagccctcaacactgcataataaaagctgaaatattgatagttgtcatttgtttttgg
aaccaaaggcttgagaaattatctaaaaatggaagtcataactgttatattctaaaagac
agtgcaaaaggtgcaaaaaagtccaatttttttgtagcatccaagcaagaggatcaatca
gagactaatgttgcaaaagaaataagagagaacggaactgtctgtggcattgatggtcct
gtaactggaatcactttttctgctgattctgggaagaaaaagatcctgctcctaaaacca
aaagatcgagaggctcctcatgtgccagagggtgcatctgagcagcagggtgcatcatct
cctgtagcaaattcacctggttcaactgctccaagacagagtcaaagacgtgaggctggt
ggaaagttagtaaggagcatacttttgagtaacgaagtgggccaaaatcaatcttcagca
gcagtccagcctcagcagaaaactgaaactacgagtctggacaatgtcaagagacatccc
cggcctgctaatatgcgattgggtatgaatggtcatgtctctaatgaaatgcctgcattg
aaatctgatggtgatacgaaaagatattcatatgataagttcatcaaaaagggtctttat
ggttcaggttctggaagtgagaaacatgaaaaacgtacaagaaataaggataggcctgat
cgtggggtgtgggcccctcttcatcgttctgatgtttcacaagctagtgaggagcgcctg
acaccctctgtgttacaatctgcacagaactctcataattccattgaagttatccaagga
gaaatgaaaggcaacatacctaatggaagtagtggacctaatattccgttagaaaatggt
tagaatggacattttagttggcgtcctgcagcccataacataaaggatgatgggtctgtc
atatcaactgagatcaagtcttccaaaagaggaggtggtagtagctctggagcccatgag
aaacaagtttgggttcagaagtcatcttcaggttcttag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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