KEGG   Durio zibethinus (durian): 36165487
Entry
36165487          CDS       T05242                                 
Symbol
rpoC2, C4D74_pgp073
Name
(RefSeq) RNA polymerase beta'' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
dzi  Durio zibethinus (durian)
Pathway
dzi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dzi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    36165487 (rpoC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dzi03021]
    36165487 (rpoC2)
   03400 DNA repair and recombination proteins [BR:dzi03400]
    36165487 (rpoC2)
Enzymes [BR:dzi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     36165487 (rpoC2)
Transcription machinery [BR:dzi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     36165487 (rpoC2)
DNA repair and recombination proteins [BR:dzi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      36165487 (rpoC2)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 Peptidase_M23
Other DBs
NCBI-GeneID: 36165487
NCBI-ProteinID: YP_009457851
AA seq 1398 aa
MAERANLVFHNKVIDGTAIKRLISRLIDRFGMAYTSHILDQVKTLGFQQATATSISLGID
DLLTIPSKGWLAQDAEQQSLILEKHHHFGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
MTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTTRGISVSPQKRTLPERIF
IQTLMGRVLADDIYMGPRCIAIRNQDIGLGLVDRFITFRTQPISIRTPFTCRSTSWICRL
CYGRSPTHDNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPFNGKI
KFNEDLVHPTRTRHGHPAFLCYMDLYVIIESEDIIHKVTIPPKSFLLVQNNQYVESEQAI
AEIRAGTYTFNLNFKERVRKHIYSDSEGEMHWSTDVYHSPEFTYSNVHLLPKTSHLWILS
GGSYKLSVVPFSLHKDQDQINIHYLSAERRYISRFSVNNDQVRHKLFSSDFYDKKEDRIS
DYSEFYRIISTGHCDFIYSAILHENADLLAKRRRNRFIIPFQLIQDQEKELMLHSHSGIS
MEIPINGIFRRKSILAFFDDPRYRRKSSGITKYGTIGAHSILKKEDVIEYRGVKKVKPKY
QMKVDRFFFIPEEVHILSESSSIMVRNNSIIGVDTQITLNTRSQVGGLVRVERKQKRIEL
KIFSGNIHFPGETDKISRHSGILIPPGTGKTNSKESKKLKNCIYVQRITPTKKKYFVLVR
PVTPYEIFDGRNLATLFPHDPFREKDNMQLRVVNYILYGNGKPTRRISDTSIQLVRTCLV
LNWDQDNKSSSAEEVCASFVEVRTNGLIRDLLRIDLVKSHIFYIRKRNDPSGSGWISDNR
SDRTNKNKNPFYSIYYNARIQQSFSQNHGTIHTLLNRNKESQSLIILSSSNCFRMGPFND
VKYHNVIKQSIKKDPLIPIKNLVGPLGTVPQIANFYSSFCPLITHNQTSVAKYLQLDNLK
QTFQVLKYYLIDENGRIYNFDPCRNIVLNAFNLNWYFPHHDYHHHYCEETSTIISLGQFI
CENVCIAKSGPHLKSGQVFIVQVDSVVIRSAKPCLATPGATVHGHYGEILYEGDTLVTFI
YEKSRSGDITQGLPKVEQVLEVRSIDSMSMNLEKRVEGWNECITRILGIPWGFVIGAELT
IVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR
AERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK
ENVVLGGMIPAGTGFKGLVHRSRQHNNILLETKKKKNFFGGEMRDIFFHHRELFDSCISN
NLHDTSSRSFIGIGFNDS
NT seq 4197 nt   +upstreamnt  +downstreamnt
atggcagaacgggccaatctggtatttcacaataaagtaatagatggaactgccattaaa
cgacttattagcagattaatagatcgcttcggaatggcatatacatcacacatcctggat
caagtaaaaactctgggtttccagcaagccactgctacatccatttcattaggaattgat
gatcttttaacgataccttctaagggatggctagcccaagatgctgaacaacaaagtttg
attttggaaaaacaccatcattttgggaatgtacacgcggtagaaaaattacgccaatct
attgagatatggtatgctacaagtgaatatttgcgacaagaaatgaatcctaattttagg
atgactgacccgcttaacccagtccatataatgtctttttcaggagctagaggaaatgca
tctcaagtacaccaattagtaggtatgagaggattaatgtcggatccccaaggacaaatg
attgatttacccattcaaagcaatttacgcgaaggactgtctttaacagaatatatcatt
tcttgctacggagcccgaaaaggggttgtggataccgccgtacgaacatcagatgctgga
tatcttacgcgcagacttgttgaagtagttcaacacattgttgtacgtagaacagattgt
ggcaccacccgagggatttctgtgagtcctcaaaagaggacgcttccggaaagaattttt
atccaaacattaatgggtcgtgtattagcagacgatatatatatgggtccgcggtgcatt
gccattcgaaatcaagatattgggcttgggcttgtcgatcgattcataacctttcgaaca
caaccaatatctattcgaactccctttacttgtaggagtacatcttggatttgtcgatta
tgttatggtcggagtcccactcatgacaacctggttgaattgggagaagctgtaggtatt
attgcggggcaatccattggagaaccggggactcaactaacattaagaacttttcatacc
ggcggagtatttacagggggtactgcagaatatgtacgagccccttttaatggaaaaatc
aaattcaatgaggatttggttcatcctacacgtacacgtcacgggcatcctgctttttta
tgttatatggacttgtatgtaattattgagagtgaagatattatacataaggtgactatt
ccaccaaaaagttttcttttagttcaaaacaatcaatatgtagaatcagaacaagcgatt
gctgagattcgcgcgggaacatacactttcaatttaaattttaaagagagggttcgaaaa
catatttattctgactcagagggggaaatgcactggagtaccgatgtgtaccattcaccc
gaatttacatatagtaatgtccatctcttaccaaaaacaagccatttgtggatattatca
gggggttcgtacaaattaagcgtagttcctttttcgctccacaaggatcaagatcaaata
aacattcattatctttctgccgaacgaagatatatttctagattctcagtgaataatgat
caagtgagacacaaattatttagttcggatttttatgataaaaaagaagataggatttcc
gattattcagaattttatcgaatcataagtactgggcattgcgatttcatatattctgct
attctccacgagaatgctgatttattggcaaagagacgaagaaatagatttattattcca
tttcaattgattcaagaccaagagaaagaactaatgctgcattcacattcaggtatctcg
atggaaatacccataaatggtattttccgtagaaaaagtattcttgctttttttgatgat
cctcgatacagaagaaagagttcaggaattactaaatatgggactataggggcgcattca
atcctcaaaaaggaggatgtgattgagtatcgaggagtcaaaaaggttaagccaaaatac
caaatgaaagtggatcgattttttttcattcccgaggaagtgcatattttatccgaatct
tcttccataatggtacggaacaatagtatcattggagtagatacccaaatcactttaaat
acaagaagccaagtgggcggattggtccgagtggagagaaaacaaaaaaggattgaactg
aaaattttttctgggaatatccattttcccggagaaacagataagatatctcgacacagt
ggcatcttgataccaccaggaacgggcaaaacaaactctaaggaatcaaaaaaattgaaa
aattgtatctatgtccaacggatcacacctaccaagaaaaagtattttgttttggttcga
cctgtaaccccatatgaaatatttgacggtagaaatttagcaacactcttcccccatgat
ccgtttcgggaaaaggataatatgcaacttcgagttgtcaattatatcctttatggaaat
ggcaaaccgactcggagaatttctgacacaagtattcaactagttcggacttgtttagtg
ttgaattgggatcaagacaacaaaagttcttccgccgaagaggtctgtgcttcatttgtt
gaagtaaggacaaatggtctgattcgagatttactaagaatcgacttagtgaaatctcat
attttttatatcagaaaaagaaatgatccgtcaggttcaggatggatttcggataatagg
tcagatcgtaccaataaaaataaaaatccgttttattccatttattacaacgcaaggatt
caacaatcatttagccaaaatcacggaactattcatacgctcttgaacagaaataaggaa
tcccaatctttgataattttgtcatcatctaattgttttcgcatgggtccattcaacgat
gtaaaatatcacaatgtgataaaacaatcaattaaaaaagatcctctaattccaattaag
aatttagtgggtcctttaggaacagtacctcaaattgcgaatttttattcatcattttgc
cctttaataactcataatcagacctcggtagcgaaatatttgcagcttgacaatttaaaa
cagacttttcaagtacttaaatattatttaatagatgaaaatgggagaatttataatttc
gatccatgccgtaacatcgttttgaatgcattcaatttgaattggtattttccccatcat
gattatcatcatcattattgtgaagaaacgtccacaataattagtcttgggcagtttatt
tgtgaaaatgtatgtatagccaaaagcggaccacacctaaaatcgggtcaagtttttatt
gttcaagttgattctgtagtaataagatcggctaagccttgtttggcgactccgggcgca
actgttcatgggcattatggagaaatcctttacgaaggagatacgttagttacatttata
tatgaaaaatcgagatctggtgatataacgcagggtcttccaaaagtggaacaagtgtta
gaagtgcgttcgattgattcaatgtcgatgaacctagaaaagagagttgagggttggaac
gaatgtataacaagaattcttggaattccttggggattcgtgattggtgccgagctaact
atagtgcaaagtcgtatctctttggttaataagatccaaaaggtttatcgatcccagggg
gtgcagatccataataggcatatagaaattattgtacgtcaaataacatcaaaagtattg
gtttcagaagatggaatgtctaatgtttttttacccggggaactgattggattattgcga
gcggaacgaacggggcgtgctttagaagaagcgatttgttatcgagccgtcttattggga
ataacgagagcatctctgaatactcaaagttttatatccgaagcaagttttcaagaaact
gctcgagttttagcaaaagctgctctccggggtcgtatcgattggttgaaaggcctgaaa
gagaacgttgttctagggggtatgatacccgctggtaccggattcaaaggattagtgcac
cggtcacggcaacataacaacattcttttggaaacaaaaaaaaaaaagaatttcttcggg
ggagaaatgagagatattttcttccaccacagagaattatttgactcttgcatttcaaac
aatttacatgatacatcaagccgctcttttataggtataggatttaatgattcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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