KEGG   Ensifer adhaerens OV14: OV14_2405
Entry
OV14_2405         CDS       T03054                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ead  Ensifer adhaerens OV14
Pathway
ead03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ead00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    OV14_2405 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ead03021]
    OV14_2405 (rpoC)
   03400 DNA repair and recombination proteins [BR:ead03400]
    OV14_2405 (rpoC)
Enzymes [BR:ead01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     OV14_2405 (rpoC)
Transcription machinery [BR:ead03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     OV14_2405 (rpoC)
DNA repair and recombination proteins [BR:ead03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      OV14_2405 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RnfC_N
Other DBs
NCBI-ProteinID: AHK44090
UniProt: A0AA86ATP0
Position
1:2338678..2342868
AA seq 1396 aa
MNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGP
IKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRI
STLLDMTLKDVERVLYFENYIVTEPGLTSLKENQLLSEEDYMLAVDEFGEDQFTAMIGAE
AIYEMLASMNLEKIAGDLRSDLAETTSDLKQKKLMKRLKIVENFMDSGNRPEWMIMKVVP
VIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQESV
DALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPELKL
HQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIREHPVLL
NRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVL
MMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDMGELHHALETKSVT
LHAKIRGRFKTVDAEGNPVSKIYETTPGRMIIGELLPRNVNVPFETCNQEMTKKNISKMI
DTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDTKVKIVGDTEALVKEYE
QQYNDGLITQGEKYNKVVDAWGKATEKVADEMMARIKAVEFDDNGRQKPMNSIYMMSHSG
ARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLADTALK
TANSGYLTRRLVDVAQDCIVNSVDCGTENGLTMTAIVDAGQVVASLGARILGRTALDDID
HPVTGVRLVDAGRMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCGVCYGRDLARGTPV
NMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRNMLRNSD
GILVAMGRNMAVQILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYTRPMMTE
VEGTVHFEDVVDGISVLEATDESTGITKRQVIDWRSTPRGTDLKPAIVIKDKNGAVLKLS
RGGDARFMLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFEARRPKD
HAVIAEIDGTIRFGRDYKNKRRVLIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEKGDYIL
DGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGD
STYIVGDNVDRIELEDVNDGLIEQGKKPAYGDPVLLGITKASLQTPSFISAASFQETTKV
LTEAAIAGKVDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDEMILEERRKGTGADV
ATPMLADLAKENAAAE
NT seq 4191 nt   +upstreamnt  +downstreamnt
atgaatcttttcaatccgcaggtgcctgcacagactttcgattccatccggatttcgatc
gcctcgccggagaagattctttcctggtcttacggtgagatcaagaagccggagacgatc
aactatcgtacgttcaagccggaacgtgacggtctcttctgcgctcgtatcttcggtccg
atcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaagtacaagggcatcatc
tgcgaaaagtgcggcgttgaagttacgctgtcgcgcgttcgccgtgagcgcatgggccat
attgagctcgccgctcccgttgcccacatctggttcctgaagtcgctgccgagccgcatt
tcgacgctgctcgacatgacgctgaaggatgtcgagcgcgttctctacttcgagaactac
atcgtcaccgagcccggtctgacgtcgctgaaggaaaaccagctcctcagcgaagaagac
tacatgctcgccgtcgacgagttcggcgaagatcagttcaccgcgatgatcggtgctgaa
gcgatctatgaaatgctcgcttcgatgaacctcgagaagatcgctggcgatctgcgttcg
gatctggccgagaccacctcggatctgaagcagaagaagctgatgaagcggttgaagatc
gtcgagaacttcatggattccggcaatcgcccggaatggatgatcatgaaggtcgttccg
gtgatcccgccggacctgcgcccgctcgtgccgctcgacggcggccgtttcgcgacgtcg
gatctgaacgatctctatcgccgcgtgatcaaccgtaacaaccgtctgaagcgtctgatc
gaactgcgcgctccaggcatcatcatccgcaacgaaaagcgcatgctgcaggaatctgtg
gacgcgctgttcgacaacggccgtcgcggtcgcgtcatcaccggcgccaacaagcgtccg
ctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctc
ggcaagcgcgtcgactactccggccgctcggttatcgtgaccggtccggagctgaagctg
caccagtgcggtcttccgaagaagatggcgctcgagctgttcaagccgttcatctacgct
cgcctcgacgccaagggttattcctcgaccgtcaagcaggccaagaagctcgtcgaaaag
gaaaagccggaagtctgggatatcctggacgaggtcatccgcgagcatccggttctgttg
aaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaaccgaccctggtcgaa
ggcaaggccatccagctgcacccgctcgtctgcacggccttcaacgccgacttcgacggc
gaccagatggccgttcacgtgccgctgtcgctcgaagcgcagctcgaagcacgcgtgctg
atgatgtcgacgaacaacattctgcacccggctaacggcgcgccgatcatcgttccgtcg
caggacatggttctgggtctctactatctgtcgatcctgaaccagaacgagcccggcgaa
ggcatggcgttttctgacatgggcgagctgcatcacgcgctcgaaaccaagtccgtgaca
ctgcacgccaagatccgtggccgtttcaagaccgtcgatgccgagggcaacccggtttcg
aagatctacgaaaccacgcctggccgcatgatcatcggtgaactgttgccgcgcaacgtc
aacgtgccgttcgagacctgcaaccaggaaatgaccaagaagaacatctccaagatgatc
gacacggtctaccgtcactgcggtcagaaagacacggtcatcttctgcgaccgcatcatg
cagctcggctttgcccatgcttgccgcgccggcatttcgttcggcaaggacgacatggtc
attccggacaccaaggtgaagatcgtcggcgatactgaagcgctcgtgaaggaatacgag
cagcagtataatgacggcctcatcacccagggcgaaaagtacaacaaggtcgttgacgcc
tggggcaaggctaccgagaaggtcgccgacgaaatgatggcccgcattaaggctgtggag
tttgacgacaacggccgtcagaagccgatgaactcgatctacatgatgtcgcactccggc
gcccgtggttctccgaaccagatgcgtcagctgggcggcatgcgcggcctgatggccaag
ccgtcgggtgaaatcatcgagacgccgatcatctcgaacttcaaggaaggtctgaccgtt
aacgagtacttcaactcgacccacggtgcccgtaagggtctggccgacaccgccttgaag
accgcgaactcgggctacctgacgcgtcgtctcgtcgacgtggcgcaggattgcatcgtc
aactccgtcgattgcggcaccgagaatggcctcaccatgacggcgatcgtcgatgccggt
caggttgtggcttcgcttggcgctcgtattcttggccgtacggctctggacgacatcgat
cacccggtcacgggcgttcgtctcgtcgacgccggccggatgatcctggaacccgacgtc
atcgagatcgaaaaggctggtatccagtcgatccgcatccgttcggcgctgacctgcgaa
atccagacgggcgtttgcggcgtctgctacggccgcgacctggcacgtggtacgccggtc
aacatgggcgaagcggttggcgttatcgctgcacagtcgatcggtgaaccgggcacccag
ctcaccatgcgtaccttccacttgggcggtacggcgaccgtggtcgaccagtcgttcctg
gaagcgtcctacgaaggcacggtacagatcaagaaccgcaacatgctgcgcaactctgac
ggcatccttgtcgccatgggtcgtaacatggccgtccagatcctcgacgaacgtggtgtc
gagcgctcctcgcagcgtgtcgcctacggttcgaagatcttcgtcgacgatggtgacaag
gtgaagcgcggtcagcgtcttgccgagtgggacccctacacccgtccgatgatgacggaa
gtggaaggtaccgttcacttcgaagacgtcgtcgacggcatctccgtgctcgaagcgacc
gacgagtccaccggcatcaccaagcgtcaggttatcgattggcgttcgacgccgcgcggt
accgacctgaagccggcgatcgtcatcaaggacaagaacggcgcggtcctgaagctgtcg
cgtggtggtgacgcccgcttcatgctttcggttgacgccattctctcggttgaaccgggc
acgaaggtttcccagggtgacgtgctggcacgttcgccgctggaaagcgccaagaccaag
gatatcaccggtggtctgccgcgcgttgccgaactgttcgaagcacgtcgtccgaaggat
cacgccgtcatcgctgagatcgatggtacgatccgcttcggccgcgactacaagaacaag
cgtcgcgttctgatcgagcctgctgaagacggtgttgagccggtcgaatacctgatcccg
aagggcaagcccttccatcttcaggatggcgactacatcgaaaagggcgactacatcctc
gacggcaacccggcgccgcacgacatcctggcgatcaagggagtggaagcactcgcttcc
tacctggtcaacgaaatccaggaagtctaccgactgcagggcgttgtgatcaacgacaag
cacatcgaagtcatcgttcgtcagatgctgcagaaggtggaaatcaccgatgccggcgac
tcgacctacatcgtcggtgacaatgtcgatcgcatcgagctcgaagacgtcaacgacggc
ctgatcgaacagggcaagaagccggcatacggcgatccggtcctgctcggcatcaccaag
gcctcgctgcagacaccgtcgttcatctcggcggcgtcgttccaggaaaccaccaaggtg
ctgaccgaagcggcgatcgccggcaaggtcgacggcctgcagggtctgaaggaaaacgtc
atcgtcggccgtctgatcccggctggtaccggcggaacgatgacgcagatccgccgcatc
gcgacggcgcgcgacgagatgattctcgaagagcgtcgcaagggtacgggcgcagatgtt
gccaccccgatgctcgccgatctcgcgaaggaaaacgcagcggccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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