KEGG   Erwinia billingiae: EbC_07900
Entry
EbC_07900         CDS       T01270                                 
Symbol
yadP
Name
(GenBank) 2\'-5\' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
ebi  Erwinia billingiae
Brite
KEGG Orthology (KO) [BR:ebi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ebi03016]
    EbC_07900 (yadP)
Enzymes [BR:ebi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     EbC_07900 (yadP)
Transfer RNA biogenesis [BR:ebi03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    EbC_07900 (yadP)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: CAX58321
UniProt: D8MNB4
Position
complement(945135..945674)
AA seq 179 aa
MSEQKRLFFGIALPDEISQSVIQWRADTFPAGAGRPVAAANLHLTLAFLGEISDEKAGAL
TQLAGRIQQRPFTLTLDDAGHWPRSGVVWLGPKQSPRGLLQLAELLRSQAARSGCYQSPM
PFHPHVTLLRNATQPVSLPPRNFSWPFRVERFALFQSVYAGGRTRYQQLAEWALTQEVI
NT seq 540 nt   +upstreamnt  +downstreamnt
atgagtgagcaaaaaaggctgtttttcggcatcgcattgccggatgaaatcagtcagagc
gtcattcagtggcgtgctgacaccttccccgccggggccggtcgtccggtcgccgcggcg
aatttacatctgacgctggcgttcctcggtgaaatcagtgatgaaaaggccggtgcgtta
acgcagctggcgggccgcatccaacagcgtccgtttacgctgacgctggatgatgccggg
cactggccgcgctccggcgtggtctggctggggccaaaacagtcgccgcgtggattgctg
caactggcggaactgttgcgatcgcaggcagccagaagtgggtgttatcaaagcccgatg
ccctttcatccgcatgtcacattactgcgcaacgctacgcagcccgtctcgttgccgcca
cgcaattttagctggccgtttcgcgtcgagcgcttcgcgctgtttcagtccgtttacgcc
ggtggccgaacccgctatcagcagctcgcagaatgggcattaacacaggaagtgatatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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