KEGG   Erwinia billingiae: EbC_16470
Entry
EbC_16470         CDS       T01270                                 
Symbol
rne
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
ebi  Erwinia billingiae
Pathway
ebi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ebi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EbC_16470 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ebi03019]
    EbC_16470 (rne)
   03009 Ribosome biogenesis [BR:ebi03009]
    EbC_16470 (rne)
Enzymes [BR:ebi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     EbC_16470 (rne)
Messenger RNA biogenesis [BR:ebi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EbC_16470 (rne)
Ribosome biogenesis [BR:ebi03009]
 Prokaryotic type
  rRNA processing factors
   EbC_16470 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: CAX59178
UniProt: D8MQS1
Position
complement(1851546..1855379)
AA seq 1277 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPEGMGLIVRTAGVGKSAEAL
QWDLSFRMKHWDAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKREAVSAIEKRQGGVRAIIVPNDQMQ
TPHYSVLRVRTGEETQTLSYHLPKLHEAEMALPSEEEHAERKRPEQPALAAFVMPDAPPA
PQEAVVAEAPPVAAVAAEPAPAAAAKAPAEAGTGLMSRFFRGLKKMFAGEEKPVEQQPQP
AVVVEEKAPEAAAPRGERRNNRRQNNRRDRNNSGERGERYGDRNERNADRNGSERNERTE
RNGNDRNERNDRNGSDRNERNADRNTDRNADRNERTSDRPERNERNDRSERTPRNDRNSN
RNERMTRDRDPAAESREENRRNKRNAPAVESPEDLLMQAVAEDAQQQQPRRERQPRRRQD
EKRAPVQEEKVAEIAEIPETVVDASVDVDGDEHVQVMPRRKPRQLDQKVRIETAEQTAAR
SFAPTEDEVAPVLEQTADFPAAEHASDAEEGEDRDSNSMPRRSRRSPRHLRVSGQRRRRY
RDERYPNQSPMPLTFAAASPEMASGKVWITYPVAQATDEHEHEQSVVPEYGHQDTADAIA
VAATADAAQPEVIAEAQPVHFSEPQPENTPAVTLVNTDETTAIETAVNEEPSVVSAADEV
IADAVTQQAVPAEEAPAVQAVDAVEEIVVEAKQAEEQRVAEEASHQAEEAASDVSPALEQ
QVEEVLAAPEAVADVTATEPHAPVPARDEPVEAPVALTPVAAPVEAPVAQAPVATPVEAP
VAQAPVAAPVEAPAAQAPVAAPVEAPVAQTPVAAPVEAPVAQAPVAAPVEAPAAQAPVAA
PVEAPAAQAPAAAAVTAQPAYKHHATAPMTKAPAPEYQAEPARASDWVRPDYQFDGQGSA
GGHAATHQATAPATRPE
NT seq 3834 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttgataaacgcaactcagcaggaggagttgcgtgtcgccctggtggat
ggacagcgcctgtacgacctggatattgaaagcccaggacacgaacagaaaaaagccaac
atctataaaggcaagatcacccgcattgaaccaagtcttgaagcagcatttgtcgattac
ggtgctgaaagacacggttttctccctctgaaagaaatctcccgcgaatacttcccaagt
aattacaattcccatggtcgccctaatatcaaggacgtactgcgtgaaggtcaggaagtt
attgttcagatcgataaagaagaacgtggaaataaaggcgccgccttaaccacctttatc
agtctggccggcagctatctggtgctgatgccgaataacccacgtgctggcggtatttcc
cgtcgcatcgaaggtgatgaccgtactgaactgaaagaggcgctctctgcacttgagctg
ccagaagggatgggtctgatcgttcgtaccgcaggcgttggcaaatctgccgaagcgctg
cagtgggacttaagcttccggatgaagcactgggacgcgattaaaaaagccgctgacagc
cgccctgctccgttcctgatccatcaggaaagcaacgttattgtccgcgccttccgcgat
tatctgcgtcaggatatcggtgaaatccttatcgataacccgaaagttctggagcttgct
cgtcagcatatcgctgccctgggccgcccggacttcagcagcaaaattaagctctacacc
ggtgaaattccgttgttcagccactatcaaatcgaatcgcaaatcgaatctgccttccag
cgtgaagtgcgcctgccttctggcggctcgattgtcatcgacaccactgaagcgctgacc
gccattgatatcaactccgctcgcgcaacgcgcggtggcgatatcgaagaaacggccttc
aacaccaacctggaagcggcagacgaaattgcccgtcagctgcgcctgcgtgaccttggc
ggcctgatcgttatcgattacatcgatatgaccccggttcgtcaccagcgtgcggttgaa
aaccgtctgcgtgaagccgttcgtcaggaccgcgcccgcattcagatcagccacatttcg
cgtttcggcctgctggagatgtcccgtcagcgcctcagcccatcactgggtgagtcaagc
catcacgtctgcccacgctgtagcggcaccggcaccatccgtgataacgaatcgctgtca
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagttcac
gcaatcgttccagtgcagattgcctcttacctgctgaacgaaaaacgcgaagcggtaagc
gcgattgaaaaacgccagggcggcgtgcgggccatcatcgtgccaaacgatcagatgcaa
accccacactactccgttctgcgtgtgcgcaccggtgaagagacacaaaccctcagctac
cacttgccgaagctgcatgaagccgaaatggcgctgccttctgaagaagagcacgccgag
cgcaaacgtcctgagcaaccggctctggccgcgtttgtgatgcctgatgcgccaccagca
ccacaggaagcggttgttgctgaagcgccaccggtggcagcagtagcagcagagccagcc
cctgcggcggcggctaaagcccctgccgaagcgggaaccggcctgatgagtcgcttcttc
cgcggcctgaagaaaatgtttgccggtgaagagaagccagtagaacaacagcctcagcca
gccgttgtggtggaagagaaagctcctgaagcggcagcgccacggggtgaacgtcgtaat
aaccgccgtcagaataaccgtcgtgaccgcaataacagcggcgaacgcggtgagcgctat
ggcgaccgtaacgaacgcaatgccgatcgtaatggttctgagcgtaacgaacgcaccgag
cgtaatggcaatgaccgcaacgagcgtaatgaccgtaacggttctgaccgtaacgagcgt
aacgccgatcgcaatactgaccgcaatgcggatcgcaacgagcggacttctgaccgtccg
gaacgtaatgagcgtaacgatcgcagcgagcgcaccccgcgtaacgaccgtaactctaac
cgcaatgagcgcatgactcgcgaccgcgatcctgctgctgaaagccgtgaagagaaccgt
cgtaacaagcgtaatgcgccggccgttgagtctccggaagatctgctgatgcaggctgtc
gccgaagatgcacaacagcaacagccgcgtcgtgagcgtcagccacgtcgtcgtcaggac
gaaaaacgcgcgccagtgcaggaagagaaagtcgctgaaatcgctgagattcctgaaacc
gttgttgatgcttccgttgatgttgacggtgatgagcacgttcaggttatgccgcgccgt
aagccgcgtcagttggatcagaaagtgcgtatcgaaacggctgagcaaactgcggctcgc
tcttttgcgccgacagaagacgaggttgcaccggtactggagcagactgctgacttccct
gcggcagaacacgccagtgacgcggaagaaggcgaagatcgtgacagcaacagcatgcca
cgtcgttcacgtcgctctcctcgtcatctgcgcgtcagcggtcaacgtcgccgtcgctac
cgtgatgagcgctacccgaaccagtcgccaatgccactgaccttcgcggctgcgtcgcca
gaaatggcttccggtaaagtgtggatcacctatcctgttgctcaggcaacggatgagcat
gaacacgagcagtctgtggtgccagagtacggtcatcaggatacggctgatgcgattgcc
gtggctgcaacagcagacgctgcacagcctgaagtgattgctgaagctcagccggtgcat
ttctctgagccacagccggaaaataccccggcagtgacgctggtgaacactgacgaaacg
actgctatcgaaacagccgttaatgaagagccgtctgtggtgtctgccgctgacgaagtt
atcgctgatgctgtgactcaacaggctgtgccagctgaagaggctccggcagttcaggct
gtcgacgcggtagaagagattgtggttgaagcgaagcaggctgaagagcagcgtgtggca
gaagaagccagccatcaggctgaagaagccgcctctgacgtcagcccggcgctggaacag
caggtagaagaagtgttggcagcaccggaagccgtggccgatgtcactgcaaccgagccg
catgcacctgttcctgcccgtgacgagccggttgaagccccagttgctctgactcctgtt
gctgcaccggttgaagcaccggttgctcaggctcctgttgctacgccggttgaagcaccg
gttgctcaggctcctgttgctgcaccagtagaagcaccagcggctcaggcacctgttgct
gcgccggttgaagccccagttgctcagacccctgtggctgcaccagtagaagcaccagtt
gctcaggcacctgttgctgcgccggttgaagcaccagcggctcaggctcctgttgctgcg
ccagttgaagcaccagcggctcaggcacctgctgctgcagcggttaccgctcagcccgct
tacaagcaccacgcaacggcgccaatgactaaagcgcctgcacctgagtatcaggctgaa
cctgcgcgtgcaagtgactgggtacgccctgactatcagttcgatggtcagggttctgca
ggcgggcatgctgcaacccatcaggcaacggctccggcaactcgcccagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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