KEGG   Enterobacteriaceae bacterium S05: CUC76_20620
Entry
CUC76_20620       CDS       T05725                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
ebu  Enterobacteriaceae bacterium S05
Brite
KEGG Orthology (KO) [BR:ebu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ebu03009]
    CUC76_20620
Enzymes [BR:ebu01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     CUC76_20620
Ribosome biogenesis [BR:ebu03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    CUC76_20620
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 TRAM Methyltransf_25 Met_10 RrnaAD PCMT Cons_hypoth95 MTS Methyltransf_11 FtsJ Methyltransf_23 Methyltransf_15 Methyltransf_4 Methyltr_RsmB-F Methyltrans_SAM PrmA TPMT CMAS Ubie_methyltran
Other DBs
NCBI-ProteinID: AWB63815
Position
4126452..4127756
AA seq 434 aa
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHQGKALFVGGVLPQEQAEVVLVEDKKQ
YARAQVKRRLTDSPQRQAPRCSHFGVCGGCQQQHASITLQQQSKRAALARLMKREVDEII
AGEPWGYRRRARLSLNYQPKTQQLQMGFRQASDKAIVEVVQCPVLVPQLEALLPAVRECL
SALSALRHLGHVELVLADNGPLMVLRHTAALPAADREKLERFSQTHGLSLYLAPQSEILE
HIHGEAPWYTSDGLRLVFSPRDFIQVNDGVNQQMVRTALAWLDLQPEDRVLDLFCGMGNF
TLPLATRAAHVVGVEGVPALVEKGRENAALNGLSNVTFFHENLEEDVTRQAWAKHGFDKV
LLDPARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHT
GHLESMVLFERRLT
NT seq 1305 nt   +upstreamnt  +downstreamnt
atggcgcaattctactctgcaaaacggcgtgtgacgacgcgccagatcataaccgttaca
gtcaacgacctcgatccctttggccagggcgtggcccgccaccaggggaaagcgctgttc
gtcggcggcgtgctgccgcaggagcaggctgaggtggtgctggtggaagacaaaaagcag
tacgcccgcgcccaggtgaaacgccgtctgaccgacagcccgcagcgccaggcgccgcgc
tgctcccattttggcgtttgcggcggctgccaacagcagcatgccagcatcacgcttcag
cagcaaagtaaacgcgccgcgctggcgcgcctgatgaagcgcgaggtggatgagatcatc
gccggcgagccgtggggctatcgccgtcgcgcgcgcttaagcttgaattatcagccaaag
acccaacaattgcagatgggttttcgtcaggccagcgacaaagcgatcgtcgaggtggtg
cagtgccctgttttggtgccccaacttgaggcgctgctgcccgccgtgcgcgagtgctta
agcgcgctgagcgcattacgccaccttggccacgtcgagctggtgctggcggacaacggc
ccactaatggtgctgcgccataccgctgcgctgccggccgctgacagggaaaaactggaa
cgtttttcgcaaactcacggtctttccctgtacctcgcgccgcaaagcgagatactggaa
catattcacggcgaagcgccatggtatacctcagacggactacgcttagtgttcagtccg
cgggattttatccaggtcaacgacggcgtgaatcagcagatggtgcgtaccgcgctggcg
tggctggatctgcagcccgaagaccgggtgctggatctgttctgcgggatgggcaatttt
accctgccgctggcgactcgcgccgcccacgtggtcggggtggaaggggtgccggcgctg
gtggagaaggggcgggaaaatgccgccctcaatggtttatccaatgtcaccttcttccat
gaaaatctggaagaggatgtcacccgccaggcctgggcgaagcacggctttgataaagtg
ctgctggacccagcccgtgccggcgcgccgggcgtgatgccgcatattataaaactggcg
ccgcggcgggtggtgtatgtttcctgcaacccggcgacgctggcgcgagacagcgaaacc
ctgttgcaggctggatatcagattcaacgcctggcgatgctggatatgttcccgcatacc
ggtcatctggaatcaatggtgttgtttgagcgcaggcttacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (20)   
   Pfam (20)   
All databases (27)   

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