Entry
Name
multisite-specific tRNA:(cytosine-C5)-methyltransferase;
multisite-specific tRNA:m5C-methyltransferase;
TRM4 (gene name, gene corresponding to ORF YBL024w)
Class
Transferases;
Transferring one-carbon groups;
Methyltransferases
BRITE hierarchy
Sysname
S-adenosyl-L-methionine:tRNA (cytosine-C5)-methyltransferase
Reaction(IUBMB)
(1) S-adenosyl-L-methionine + cytosine34 in tRNA precursor = S-adenosyl-L-homocysteine + 5-methylcytosine34 in tRNA precursor [RN:
R00595 ];
(2) S-adenosyl-L-methionine + cytosine40 in tRNA precursor = S-adenosyl-L-homocysteine + 5-methylcytosine40 in tRNA precursor;
(3) S-adenosyl-L-methionine + cytosine48 in tRNA = S-adenosyl-L-homocysteine + 5-methylcytosine48 in tRNA;
(4) S-adenosyl-L-methionine + cytosine49 in tRNA = S-adenosyl-L-homocysteine + 5-methylcytosine49 in tRNA
Reaction(KEGG)
Substrate
S-adenosyl-L-methionine [CPD:
C00019 ];
cytosine34 in tRNA precursor;
cytosine40 in tRNA precursor;
cytosine48 in tRNA;
cytosine49 in tRNA
Product
S-adenosyl-L-homocysteine [CPD:
C00021 ];
5-methylcytosine34 in tRNA precursor;
5-methylcytosine40 in tRNA precursor;
5-methylcytosine48 in tRNA;
5-methylcytosine49 in tRNA
Comment
The enzyme from Saccharomyces cerevisiae is responsible for complete 5-methylcytosine methylations of yeast tRNA. The incidence of modification depends on the cytosine position in tRNA. At positions 34 and 40, 5-methylcytosine is found only in two yeast tRNAs (tRNALeu(CUA) and tRNAPhe(GAA), respectively), whereas most other elongator yeast tRNAs bear either 5-methylcytosine48 or 5-methylcytosine49, but never both in the same tRNA molecule [1]. The formation of 5-methylcytosine34 and 5-methylcytosine40 is a strictly intron-dependent process, whereas the formation of 5-methylcytosine48 and 5-methylcytosine49 is an intron-independent process [2,3].
History
EC 2.1.1.202 created 1976 as EC 2.1.1.29, part transferred 2011 to EC 2.1.1.202
Orthology
K15334 multisite-specific tRNA:(cytosine-C5)-methyltransferase
Genes
CSAT : 104702776 104713682 104720928 104751878
EUS : EUTSA_v10000050mg EUTSA_v10024482mg
BRP : 103837897 103854554 103864345
BNA : 106363702 106406275 106415936 106439372 106446409 111215813
BOE : 106292165 106312686 106342432
RSZ : 108813377 108839838 108855463
HSYR : 120122418 120195582
RARG : 115738841 115739349
GSJ : 114382634 114413089 114421850
VUM : 124825441 124825443 124828169
CCAJ : 109798068 109813507
APRC : 113849527 113873888
TPRA : 123906248 123908167 123917005
PSAT : 127082943 127096483 127107671
VVO : 131603250 131661462 131661472
LANG : 109343679 109361180 109362630
PCIN : 129309217 129320546
QSA : O6P43_023175 O6P43_030487
PCOX : 137721183 137735705
CMAX : 111478413 111496800
CMOS : 111453515 111463320
CPEP : 111781403 111803463
CAVE : 132165871 132166529
SPEN : 107004815 107020788
SSTN : 125845188 125867306
SDUL : 129880797 129898434
SVER : 125831028 125837171
CANN : 107850803 107870980
NTA : 107766522 107802160 107808849 107822797
SSPL : 121768532 121772257
CARB : 113700089 113702356
SLAF : 141594202 141622302
PSOM : 113286760 113312090 113343297 113357906
DOSA : Os08g0484400 Os09g0471900
TDC : 119286785 119294937 119301908 119310338
TAES : 123086996 123090971 123095993 123104052 123112276 123121800
LPER : 127301950 127323960
LRD : 124653455 124657109 124685168
MFLO : 136476721 136499080 136546410
SITA : 101758722 101760456
PVIR : 120660973 120678763 120681975 120712694
PHAI : 112879702 112897214
PAUA : 133897208 133898879
SMO : SELMODRAFT_120643 SELMODRAFT_418525
OLU : OSTLU_27152 OSTLU_31007 OSTLU_36629
CGR : 2890330(GVI51_K01837)
NCS : NCAS_0B05640(NCAS0B05640)
NDI : NDAI_0B01830(NDAI0B01830) NDAI_0B02980(NDAI0B02980)
TPF : TPHA_0C02870(TPHA0C02870) TPHA_0H00150(TPHA0H00150)
TBL : TBLA_0A08740(TBLA0A08740)
TDL : TDEL_0B04390(TDEL0B04390)
KAF : KAFR_0B02220(KAFR0B02220)
KNG : KNAG_0D02050(KNAG0D02050) KNAG_0G01510(KNAG0G01510)
LBG : 92206916(LODBEIA_P17200)
CAL : CAALFM_CR04300WA(CaO19.518)
ASAU : 88173184(PUMCH_002119)
YLI : 2912410(YALI2_E00149g)
NTE : NEUTE1DRAFT80343(NEUTE1DRAFT_80343)
SMP : 10806132(SMAC4_01688)
RTHE : 98125926(VTJ83DRAFT_4758)
TATV : 25779733(TrAtP1_001535)
TASP : 36612967(TrAFT101_000990)
UVI : 66061886(UV8b_01108)
PLJ : 28883234(PLICBS_000778)
DCON : 63713161(DCS_00518)
CDET : 87941830(CDEST_05327)
BFU : BCIN_06g07260(Bcncl1)
PPSF : 300796029(PFLUO_LOCUS962)
CPW : 9694315(D8B26_002911)
PTRR : 6340621(PtrM4_059160)
ADAC : 96082012(ACET3X_001690)
SPO : 2541917(trm402) 2542264(trm401)
SOM : SOMG_01788(trm402) SOMG_03864(trm401)
CDEC : 89993264(IAS62_006496)
CTEG : 91993376(I308_106521)
CBAS : 91986851(I312_106808)
CDEP : 91085040(L203_100826)
KMG : 30161971(I203_107406)
KNE : 92183217(IAR55_005959)
KDJ : 28965609(I303_101954)
KBI : 30208359(I302_100585)
KPIN : 30174685(I206_101717)
KSH : 87953968(IL334_001837)
KER : 91104747(V865_005946)
KSN : 43591699(CI109_106670)
KEP : 91092600(L201_001928)
CCAC : CcaHIS019_0705920(NCL1)
SCM : SCHCO_02512227(SCHCODRAFT_02512227)
EIV : EIN_183240 EIN_373320
PTM : GSPATT00013766001 GSPATT00018463001
TVA : 4749134(TVAGG3_0615400)
SSAO : 94300013(SS50377_25990)
» show all
Taxonomy
Reference
Authors
Motorin Y, Grosjean H
Title
Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme.
Journal
Sequence
Reference
Authors
Jiang HQ, Motorin Y, Jin YX, Grosjean H
Title
Pleiotropic effects of intron removal on base modification pattern of yeast tRNAPhe: an in vitro study.
Journal
Reference
Authors
Strobel MC, Abelson J
Title
Effect of intron mutations on processing and function of Saccharomyces cerevisiae SUP53 tRNA in vitro and in vivo.
Journal
Reference
Authors
Walbott H, Husson C, Auxilien S, Golinelli-Pimpaneau B
Title
Cysteine of sequence motif VI is essential for nucleophilic catalysis by yeast tRNA m5C methyltransferase.
Journal
Other DBs
ExPASy - ENZYME nomenclature database: 2.1.1.202