Entry
Name
cyclic-di-AMP phosphodiesterase;
gdpP (gene name)
Class
Hydrolases;
Acting on ester bonds;
Phosphoric-diester hydrolases
BRITE hierarchy
Sysname
cyclic bis(3'->5')diadenylate 3'-adenylylhydrolase
Reaction(IUBMB)
cyclic di-3',5'-adenylate + H2O = 5'-O-phosphonoadenylyl-(3'->5')-adenosine [RN:
R12345 ]
Reaction(KEGG)
Substrate
Product
5'-O-phosphonoadenylyl-(3'->5')-adenosine [CPD:
C22092 ]
Comment
The enzyme, described from Gram-positive bacteria, degrades the second messenger cyclic di-3',5'-adenylate. It is a membrane-bound protein that contains a cytoplasmic facing Per-Arnt-Sim (PAS) domain, a modified GGDEF domain, and a DHH/DHHA1 domain, which confers the phosphodiesterase activity. Activity requires Mn2+ and is inhibited by pApA.
History
EC 3.1.4.59 created 2019
Orthology
K22927 cyclic-di-AMP phosphodiesterase
Genes
BAZ : BAMTA208_20430(yybT)
BFD : NCTC4823_00040(yybT)
BACL : BS34A_43850(nrnA_2)
BKW : BkAM31D_25265(nrnA_2)
PCAL : BV455_01806(nrnA_1)
PARG : PspKH34_37920(gdpP)
BLEN : NCTC4824_04273(yybT)
SCAP : AYP1020_2050(nrnA_2)
GHA : NCTC10459_01552(nrnA_2)
BLR : BRLA_c046400(nrnA_2)
BAYD : BSPP4475_00155(gdpP)
KZO : NCTC404_00791(nrnA_1)
SFER : NCTC12278_01884(nrnA_2)
LOR : AYI71_04715 AYI71_09390
ECEC : NCTC12421_00020(ppaC_1)
JEP : BW721_08495 BW721_08505
CCOH : SAMEA4530647_2467(nrnA)
HHW : NCTC503_02737(nrnA_2)
BPRO : PMF13cell1_05038(gdpP)
CSCI : HDCHBGLK_01387(gdpP)
PHX : KGNDJEFE_00211(gdpP)
HCV : FTV88_0899 FTV88_0900
PHAR : NCTC13077_01561(nrnA_2)
PIV : NCTC13079_01216(ppaC)
VRM : 44547418_01780(nrnA_2)
VDN : NCTC11831_01854(nrnA_2)
MANA : MAMMFC1_01273(nrnA_1)
PFAC : PFJ30894_00314(nrnA_1)
FIT : Fi14EGH31_00850(gdpP)
MBP : MBSPM3_v1c0160(rplI)
PLUF : LFWB_3140(rplI) LFWB_4510(rplI)
PPHY : H7686_0002585(rplI)
AHK : NCTC10172_00925(rplI)
AAXA : NCTC10138_00580(rplI)
MNU : NCTC10166_00762 NCTC10166_00904
MCOM : NCTC10178_00447(ppaC)
MPU : MYPU_5170(MYPU_5170)
MGAL : NCTC10186_00514(nrnA_1)
MMEL : NCTC10153_00233(ppaC)
MSAI : NCTC10113_01317(ppaC)
MOB : NCTC10112_00502(ppaC)
» show all
Taxonomy
Reference
Authors
Rao F, See RY, Zhang D, Toh DC, Ji Q, Liang ZX
Title
YybT is a signaling protein that contains a cyclic dinucleotide phosphodiesterase domain and a GGDEF domain with ATPase activity.
Journal
Sequence
Reference
Authors
Corrigan RM, Abbott JC, Burhenne H, Kaever V, Grundling A
Title
c-di-AMP is a new second messenger in Staphylococcus aureus with a role in controlling cell size and envelope stress.
Journal
Sequence
Reference
Authors
Griffiths JM, O'Neill AJ
Title
Loss of function of the gdpP protein leads to joint beta-lactam/glycopeptide tolerance in Staphylococcus aureus.
Journal
Sequence
Reference
Authors
Bowman L, Zeden MS, Schuster CF, Kaever V, Grundling A
Title
New Insights into the Cyclic Di-adenosine Monophosphate (c-di-AMP) Degradation Pathway and the Requirement of the Cyclic Dinucleotide for Acid Stress Resistance in Staphylococcus aureus.
Journal
Other DBs
ExplorEnz - The Enzyme Database: 3.1.4.59
ExPASy - ENZYME nomenclature database: 3.1.4.59