KEGG   Pectobacterium atrosepticum SCRI1043: ECA0403
Entry
ECA0403           CDS       T00186                                 
Symbol
holC
Name
(GenBank) DNA polymerase III, chi subunit
  KO
K02339  DNA polymerase III subunit chi [EC:2.7.7.7]
Organism
eca  Pectobacterium atrosepticum SCRI1043
Pathway
eca03030  DNA replication
eca03430  Mismatch repair
eca03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:eca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ECA0403 (holC)
   03430 Mismatch repair
    ECA0403 (holC)
   03440 Homologous recombination
    ECA0403 (holC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:eca03032]
    ECA0403 (holC)
   03400 DNA repair and recombination proteins [BR:eca03400]
    ECA0403 (holC)
Enzymes [BR:eca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     ECA0403 (holC)
DNA replication proteins [BR:eca03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     ECA0403 (holC)
DNA repair and recombination proteins [BR:eca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     ECA0403 (holC)
SSDB
Motif
Pfam: DNA_pol3_chi
Other DBs
NCBI-ProteinID: CAG73322
UniProt: Q6DA53
Position
complement(460923..461372)
AA seq 149 aa
MKNATFYLLEHDSKSGELSAHEALACDLAAERWRAGKRVLIVCEDEQQAIRLDEALWQRD
PNAFVPHNLAGEGPRHGAPVELAWPQRRGNAPRDLLISLLPQFADFATAFHEVIDFVPYE
DSLKQLARDRYKTYRSVGFRLTTATPPTH
NT seq 450 nt   +upstreamnt  +downstreamnt
atgaaaaacgcaacgttctatcttctcgaacacgacagcaaaagcggtgagctcagcgcc
catgaggcactggcatgcgatctggcggcagaacgttggcgagcaggaaagcgcgtgctg
attgtctgcgaggacgaacagcaggccattaggcttgacgaggcgctgtggcaaagagac
cccaacgcattcgttccgcataatctggcaggcgaagggccgcgtcacggcgcaccggtc
gaactggcatggccacagcggcgtggcaatgcgccacgggacctgttgatcagcctattg
ccgcagttcgcagattttgccaccgctttccatgaagtgatagactttgtcccttacgaa
gactccttgaaacagttggcgcgcgaccgctataaaacctatcgcagcgtcggcttccga
ttgaccacggctacgccgccaactcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system