KEGG   Equus caballus (horse): 100050513
Entry
100050513         CDS       T01058                                 
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1 isoform X1
  KO
K14315  nucleoporin NDC1
Organism
ecb  Equus caballus (horse)
Pathway
ecb03013  Nucleocytoplasmic transport
ecb05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:ecb00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100050513 (NDC1)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100050513 (NDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecb03019]
    100050513 (NDC1)
Messenger RNA biogenesis [BR:ecb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     100050513 (NDC1)
SSDB
Motif
Pfam: Ndc1_Nup GP41
Other DBs
NCBI-GeneID: 100050513
NCBI-ProteinID: XP_001489103
Ensembl: ENSECAG00000016387
VGNC: 20607
UniProt: A0A9L0SNI1
Position
2:5650159..5699339
AA seq 776 aa
MQRRPQFLEPRWTLLRRDLLDSRGRVLESTFPWGHVSAGQCWPVRPVQTKHRRNGLGPGP
GFAQAAFEAAPTGSSWDFPPFELRWRAGFPSPAPRRAGAAITMATAVSRPCAGGSRDILW
RVLGWRIVSSIVWSVLLLPICTTVFIILSSIDLFHPIQWLSDSFNDLYSSYVIFYLLLLS
VVIVIISIFNLEFYTVVPSVPCSRLALIGKILHPQQLVHSFIHAAMGMMMAWCAAVITRG
RYSFLVVPCTGAESLENHSAQTCLNEYHLFFLLAGAFMGYSYSLLYFINNMNYLPFPIIQ
QYKFLRFRRSLLLLVKHSCVESLFLIRNFCIVYYFLGHIPKAWIGTAMDLRIDEQFHRPL
DTVSGLLNLSLLYHVWLCGVFLLMTWYSSWILFKIYATEAHLFPVQPPFAEESDECLPKV
LNSNPPLIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNDMTQ
KLVLYQEAAATNGRVLSSSYPVESKKLNCPEETTFQTPTSNQMPRPSVPPLVRTSLFSSK
LSTPDVASPLGSPFGSGVMNRMAGIFDVNTCYGSPQSPQLVRRGPRLWTSASDQQMTEFS
NPPSTTVSAEGKTVRQPSGIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDA
QMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILSTLLTLQEAVDKYFKLPHASSKPPRI
SGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE
NT seq 2331 nt   +upstreamnt  +downstreamnt
atgcagcgccgcccccagtttctggagccccgctggaccctgcttcggagagaccttttg
gactccagagggcgggtcctggagtccacgttcccttgggggcacgtgtctgcagggcag
tgctggcccgtccggcctgtccagacgaagcatcgaaggaatgggttgggacctgggccg
ggctttgctcaggcagcgtttgaggcagccccaacggggtcctcctgggactttcctccc
tttgaactgcggtggcgggcgggcttcccgtcgcctgctccccgcagagcaggggccgcc
atcaccatggccacggctgtgagtcggccttgcgccggcgggtcgcgggatattctgtgg
cgcgtcttgggctggaggatagtctcaagcattgtctggtcagtgctgctgctccccatc
tgtaccacagtgtttatcatcctcagcagcattgatttatttcatcctatacagtggctg
tctgattccttcaatgatctatacagttcctatgtaatcttttaccttctgctgctgtca
gtggtaatagtaataataagtattttcaatctggaattctatacagtggtgccttccgtt
ccctgctccaggctggctctgatcgggaagatcctccatcctcagcagctcgtgcactcg
tttattcatgccgccatgggaatgatgatggcctggtgcgctgctgtgataaccaggggt
cgatacagttttcttgtggttccctgcactggtgctgagagtttagagaaccattctgca
caaacctgcttaaatgagtatcacctttttttcctactggctggagcatttatgggctat
agctatagcctcctgtattttattaacaacatgaactatcttccgtttcccatcatacag
cagtacaagttcttgcgctttaggagatctctgctcttactagttaagcatagttgtgtg
gagtcactgttcctgattagaaatttctgcattgtgtattattttcttggccatattccc
aaagcttggattggcactgctatggaccttcgcatagatgagcagtttcacaggcctctt
gacactgtgagtggcctcttgaatctctccttactctaccatgtctggttatgtggtgtc
tttctcctgatgacttggtacagctcctggatactcttcaaaatctatgccacagaggct
catctgtttcctgttcaaccaccatttgcagaagagtcagatgaatgcctcccgaaagtt
ttaaacagcaatcctcccctcatcataaagtatttggccttgcaggacctgatgttgctt
tctcagtattctccctcacgaagacaagaagttttcagccttagccaaccaggtggacac
ccccacaactggacagccatttcacgggagtgcttgaatcttttaaatgatatgactcag
aaacttgttctctaccaagaagctgctgctacgaatgggagggtgctgtcttcctcatac
ccagtggaaagtaagaaattgaattgtccagaagaaactacttttcagaccccgacatct
aaccagatgcctcggccttcagtgccaccattagttaggacatcactgttttcctcaaaa
ttatctacgcctgacgttgcaagtcctcttggaagcccatttggctctggtgtaatgaat
cggatggctggaatttttgatgtgaacacctgctatgggtcacctcaaagtcctcagcta
gtaagaagagggccaagattatggacttctgcttctgatcagcaaatgactgaattttct
aatcctccatctaccactgttagtgctgagggtaagacagtgagacagcccagtgggatt
tattcatggattcagaataaacgtgaacagattaagaatttcttgtcaaaacgggtgctg
ataatgtattttttcagtaagcacccagaggcctccattcaggctgttttttcggatgcc
caaatgcatatttgggcattagaaggtctgtctcacttggtagcagcatcatttacagaa
gatagatttggagtggtccagacgacactaccagctattcttagtactttgttgacgctg
caagaggcagttgacaagtacttcaagcttcctcatgcttccagtaaaccacctcggatc
tcaggaagccttgtggacacctcttacaaaacattgagatttgcctttagagcgtcacta
aaaactgccatctatcgaataactactacatttggtgaacatctcaatgctgtgcaagca
tctgcagaacatcagaaaagacttcaacagttcttggagttcaaagaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (53)   

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