KEGG   Escherichia coli O6 K2 H1 CFT073 (UPEC): c3822
Entry
c3822             CDS       T00106                                 
Symbol
ygjF
Name
(GenBank) G/U mismatch-specific DNA glycosylase
  KO
K03649  double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
Organism
ecc  Escherichia coli O6:K2:H1 CFT073 (UPEC)
Pathway
ecc03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ecc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    c3822 (ygjF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ecc03400]
    c3822 (ygjF)
Enzymes [BR:ecc01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.28  double-stranded uracil-DNA glycosylase
     c3822 (ygjF)
DNA repair and recombination proteins [BR:ecc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     c3822 (ygjF)
SSDB
Motif
Pfam: UDG
Other DBs
NCBI-ProteinID: AAN82267
UniProt: P0A9H2
Position
complement(3655562..3656068)
AA seq 168 aa
MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLL
DYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRG
AQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELDQALVVRGR
NT seq 507 nt   +upstreamnt  +downstreamnt
atggttgaggatattttggctccagggttacgggtcgtgttttgcggtatcaaccctggt
ctttcatccgccggaacgggttttccctttgctcatccggcaaaccgcttctggaaggtg
atatatcaggccgggtttaccgaccgtcagttgaagccgcaggaggcacagcatctgctg
gattatcgttgtggcgtcaccaaactggtagaccgtccaacggtgcaagccaatgaagtg
tcaaagcaggaactgcacgcaggcgggcgtaagctaattgaaaaaatagaagattatcag
ccgcaggcgttggcgattctgggcaaacaagcatatgaacagggattcagccagcgcggt
gcacagtgggggaaacaaactctcaccattggttcgacgcagatttgggtgctgccaaat
cccagcggtttaagtcgcgtttcactggagaaactggttgaagcgtatcgcgagctggac
caggcgctggtggtgcgtgggcgataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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