KEGG T00044: Z2847

Escherichia coli O157 H7 EDL933 (EHEC): Z2847

Entry

Z2847             CDS       T00044

Symbol

rnd

Name

(GenBank) RNase D, processes tRNA precursor

K03684

ribonuclease D [EC:3.1.13.5]

Organism

ece Escherichia coli O157:H7 EDL933 (EHEC)

Brite

KEGG Orthology (KO) [BR:ece00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ece03016]
    Z2847 (rnd)
Enzymes [BR:ece01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     Z2847 (rnd)
Transfer RNA biogenesis [BR:ece03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Z2847 (rnd)

SSDB

Motif

Pfam:

DNA_pol_A_exo1 RNAseD_HRDC_C HRDC

Other DBs

NCBI-ProteinID:

AAG56793

UniProt:

Q8XDR7

Position

complement(2563897..2565024)

AA seq 375 aa
MNYQMITTXDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI
TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS
MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL
DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR
EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEEALPQPMLNLMDM
PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE
LMAEALHNLLQEYPQ

NT seq 1128 nt +upstreamnt +downstreamnt
ttgaattaccaaatgattaccacggrcgatgcgctggcttctttgtgtgaagccgtccgt
gcctttccggcgatagccctggatactgaatttgttcgtacgcgcacttattacccgcag
ctggggttgattcaacttttcgatggcgagcatctggcgctaattgatcctctcgggatc
accgactggtcaccgctgaaagcgatcctgcgcgatccgtccatcacaaaatttctccat
gcaggcagtgaagatctggaagtgttcctcaatgtctttggcgaattaccacaacccctg
attgacacgcaaatccttgctgccttctgcggacgcccgatgtcatggggtttcgcttcc
atggtggaagagtattccggcgttacgctggacaagagtgaatcgcgcaccgactggctg
gccagaccgctgaccgaacgtcagtgtgaatatgcagcggcggatgtctggtatctgtta
ccgatcaccgccaagcttatggtagaaacggaggcctccggctggctaccagcggcgctg
gatgaatgtcgcctgatgcaaatgcgtcgtcaggaagtcgttgcgccggaagatgcctgg
cgtgatatcaccaatgcctggcaattacgcacacgccaactggcctgtctgcaactgtta
gccgactggcgactgcgcaaggcgcgagagcgcgatctggcggtgaactttgtcgtgcgt
gaagagcatttgtggtcggtagcgcgttatatgccgggaagtttaggcgaactggacagc
ctgggtttatccggtagcgaaatccgctttcacggtaaaacgctgctggcgctggtggaa
aaagcgcagacattgccggaagaggccttaccgcagccgatgcttaacctgatggacatg
ccgggttatcgtaaagcgtttaaagcgattaagtcgctgattactgacgtgagcgaaacg
cacaagatcagcgccgaattgctggcatcgcgtcggcaaatcaaccaactgctgaactgg
cactggaaactgaaaccgcagaacaatttgccggagctgatttccggctggcgtggtgag
ctgatggcggaagcattacacaatttattgcaggaatatccgcagtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

Download RDF

DBGET integrated database retrieval system