KEGG   Escherichia coli O127 H6 E2348/69 (EPEC): E2348C_3445
Entry
E2348C_3445       CDS       T00796                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
ecg  Escherichia coli O127:H6 E2348/69 (EPEC)
Pathway
ecg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ecg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E2348C_3445 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecg03019]
    E2348C_3445 (pnp)
   03016 Transfer RNA biogenesis [BR:ecg03016]
    E2348C_3445 (pnp)
Enzymes [BR:ecg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     E2348C_3445 (pnp)
Messenger RNA biogenesis [BR:ecg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     E2348C_3445 (pnp)
Transfer RNA biogenesis [BR:ecg03016]
 Prokaryotic type
  tRNA degradation factors
   E2348C_3445 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase S1 RNase_PH_C KH_1 S1_2 KH_2 DUF2110 aRib SLS1_KH2 DUF5813
Other DBs
NCBI-ProteinID: CAS10993
UniProt: B7UJ59
Position
complement(3587313..3589448)
AA seq 711 aa
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPNGAARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE
ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAALEAPAAEQGE
NT seq 2136 nt   +upstreamnt  +downstreamnt
ttgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgactctggaaacc
ggcatgatggctcgtcaggctactgccgctgttatggttagcatggatgacaccgcggta
tttgttaccgttgttggtcagaaaaaagccaaaccaggtcaggacttcttcccgctgacc
gttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttcttccgtcgt
gaaggccgcccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgcccgattcgc
ccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgccaccgtggtttctgtt
aacccgcaggttaacccggatatcgtcgcgatgattggtgcttccgcagcactgtctctg
tctggtattccgttcaatggcccgaatggtgctgcccgtgtaggttacatcaatgaccag
tacgtactgaacccgactcaggacgaactgaaagagagcaaactggacctggttgttgcc
ggtacagaagctgccgtgctgatggttgaatctgaagctgaactgctgagcgaagaccaa
atgctgggcgcagtggtgttcggtcatgaacaacagcaggttgttattcagaacatcaat
gaactggtgaaagaagccggtaaaccgcgttgggactggcagccggagccggtaaacgaa
gcgctgaacgcgcgcgttgctgcactggctgaagctcgtctgagcgatgcttaccgcatc
accgacaaacaagagcgttatgcgcaggttgatgtcatcaaatctgaaactatcgcgacg
ctgcttgctgaagatgaaaccctggacgaaaacgaactgggtgaaattctgcacgctatt
gagaaaaacgttgttcgtagccgcgtactggcaggcgaaccgcgtatcgacggtcgtgaa
aaagatatgatccgtggtctggatgtgcgtactggcgtgctgccgcgtactcacggttct
gcgctgttcacccgtggtgaaacgcaggcgctggttaccgcaacgctgggtaccgctcgt
gacgcgcaggttcttgatgaactgatgggcgaacgtactgataccttcctgttccactat
aacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaagcgtcgtgaa
attggtcacggtcgtctggcgaagcgcggcgtgctggcagtaatgccggatatggacaaa
ttcccgtacaccgtacgtgttgtgtctgaaatcaccgaatccaacggttcctcttctatg
gcttccgtgtgcggcgcgtctctggcgctgatggacgcaggtgtgccaatcaaagccgcc
gttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactacgttgtactgtctgac
attttgggcgacgaagatcacctgggcgatatggacttcaaagttgcgggttcccgtgac
ggtatctctgcattgcagatggatatcaaaattgaaggtatcaccaaagagatcatgcag
gttgcactgaaccaggctaaaggtgcgcgtctgcatatactgggggtaatggaacaggcg
atcaacgcgccgcgtggcgatatctctgagttcgcaccgcgtatccataccatcaagatc
aacccggacaagatcaaagatgttatcggtaaaggcggttctgtaatccgtgctctgacc
gaagaaaccggcaccaccatcgaaattgaagatgacggtactgtgaagatcgcagcgacc
gacggcgagaaagcgaaacacgcgattcgtcgtatcgaagagatcactgcagaaatcgaa
gtgggccgcgtctacaatggtaaagtgacccgtatcgttgactttggcgcatttgttgcc
attggtggcggtaaagaaggtctggtccacatctctcaaatcgctgataaacgcgttgag
aaagtgaccgattacctgcagatgggtcaggaagtaccggtgaaagtgctggaagttgat
cgccagggccgtatccgtctgagcattaaagaagcgactgagcagtctcaacctgctgca
gcactggaagctccggctgctgaacagggcgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (11)   
   Pfam (11)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system