KEGG   Enterobacter hormaechei subsp. hormaechei: LI64_15205
Entry
LI64_15205        CDS       T03709                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
eclz  Enterobacter hormaechei subsp. hormaechei
Pathway
eclz03030  DNA replication
eclz03410  Base excision repair
eclz03420  Nucleotide excision repair
eclz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:eclz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LI64_15205 (ligA)
   03410 Base excision repair
    LI64_15205 (ligA)
   03420 Nucleotide excision repair
    LI64_15205 (ligA)
   03430 Mismatch repair
    LI64_15205 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:eclz03032]
    LI64_15205 (ligA)
   03400 DNA repair and recombination proteins [BR:eclz03400]
    LI64_15205 (ligA)
Enzymes [BR:eclz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LI64_15205 (ligA)
DNA replication proteins [BR:eclz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LI64_15205 (ligA)
DNA repair and recombination proteins [BR:eclz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LI64_15205 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LI64_15205 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     LI64_15205 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LI64_15205 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH DUF2229 RNA_ligase
Other DBs
NCBI-ProteinID: AJB71823
Position
complement(3201935..3203950)
AA seq 671 aa
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSVDNLSWCCELKLDGLA
VSILYENGVMVRAATRGDGTTGEDITTNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGDLPDTHL
GRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPADTRAIEFPAHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNIVNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEK
ATIDELQKVPDVGIVVATHVYNFFAEESNREVIGKLLEQGIHWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggactcaatcgaacaacaacttactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggatgcaccggaagtgccggatgcggagtatgaccgcctgatgcgt
gaactgcgtgagctggaagcgcagcaccctgaactaattacgcccgattccccaacgcag
cgcgtcggcgcggaaccgctgggcgctttcagccaggtgcgccacgaagtgccgatgctg
tcgctggataacgtgtttgatgaagagagttttctggctttcaacaagcgtgtacaggat
cgcctgaagagcgtcgacaacctgagctggtgctgcgagctaaagctggatggtctggcc
gtcagtattctttacgagaacggtgtgatggtgcgtgccgcaacgcgcggcgacggcact
accggggaagatatcaccaccaacgtgcgtaccattcgtgcgatcccgctgaaactgcgt
ggcgataatattcctgcccggctggaagtgcgcggggaagtgttccttccgcaggcgggc
ttcgagaagatcaacgaagaagcgcgtcgtaccggcggaaaagtatttgctaacccgcgt
aacgcggcggcaggttcactgcgccagctcgatccgcgtatcaccgcgaagcgaccactt
actttcttctgctacggcgtcgggatcctggaaggcggtgacctgcctgacacccacctg
ggtcgtttattgcagttcaaagagtgggggttgccggtaagcaatcgcgtgcagctctgc
gactctccggaggcggtgttggccttctatcacaaggttgaagaagatcgtcctacgctc
gggtttgatattgatggcgtagtgattaaggtcaactccctggcattgcaggaacagttg
ggttttgtggcccgtgcgccacgctgggcggtcgcctttaagttcccggcgcaggagcag
atgaccttcgttcgcgacgtggagtttcaggtaggacgtacgggggcgattacgccagtg
gcacgtctggaaccagtgcaggtggctggcgtgctggtaagtaacgccacgctgcataac
gctgatgaaattgcgcgtctgggtctgcgcattggtgacaaagtggtgattcgccgtgcg
ggggatgtgatcccgcaggtggttaacgttgtggaatcagagcgtcctgccgatacccgc
gccatcgagtttccagcccattgtccggtatgtggttcggacgttgagcgcgtggaaggt
gaagcggtaacgcgctgtacgggcggcttaatctgtggtgcgcagcgtaaagaatccctg
aagcactttgtctcccgccgggcgatggatgtcgacggaatgggtgacaagataatcgac
cagttggttgagaaagagtacgttcatacgccagcggacctctttaccctgacggcaggt
aagctaaccgggcttgatcgtatgggtccgaaatctgcccagaacatcgtcaacgcgctc
gaggcggccaaaaacaccacctttgcccgtttcctttatgcgctcggcattcgtgaagtc
ggagaggcgacggcggccgggctggcggcctatttcggcacgctggacgcgctggagaaa
gccaccatcgacgagctacagaaagtccctgatgtcggcattgtggtcgccacccatgtc
tataacttcttcgccgaagagagcaaccgtgaagtgatcggtaaattactggagcagggg
attcactggcctgcgccggtggtggttaatgccgaagagatcgacagcccgtttgccggt
aaaacggtggtgctgaccggcagcctgagccagctctcgcgcgatgacgcaaaagcgcgc
ctggtggcgctgggggcaaaagtagcaggcagcgtgtcaaagaaaaccgacctggtgatt
gccggggaagcggccggttcgaagctggcaaaagcgcaggagcttggcatcgaggtgatc
gatgaagcggaaatgatgcgcctgttaggagagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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