KEGG   Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_4556
Entry
ECRM13516_4556    CDS       T03011                                 
Symbol
trmE
Name
(GenBank) GTPase and tRNA-U34 5-formylation enzyme TrmE
  KO
K03650  tRNA modification GTPase [EC:3.6.-.-]
Organism
ecoh  Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:ecoh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ecoh03016]
    ECRM13516_4556 (trmE)
Transfer RNA biogenesis [BR:ecoh03016]
 Eukaryotic type
  tRNA modification factors
   Other tRNA modification factors
    ECRM13516_4556 (trmE)
 Prokaryotic type
   Methyltransferases
    ECRM13516_4556 (trmE)
SSDB
Motif
Pfam: MnmE_helical TrmE_N MMR_HSR1 FeoB_N Dynamin_N RsgA_GTPase Ras AIG1 ABC_tran Roc Arf AAA_28 SRPRB Gtr1_RagA AAA_18
Other DBs
NCBI-ProteinID: AHG17171
Position
4507117..4508481
AA seq 454 aa
MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPRYADYLPFKDADGSVLD
QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK
LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE
IDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE
AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL
FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGISEVNGHALIRLSAR
TGEGVDVLRNHLKQSMGFDTNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGELLA
EELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK
NT seq 1365 nt   +upstreamnt  +downstreamnt
atgagcgataatgacactatcgtagcccaggccacgcctccgggacgtggcggcgttggc
atcctgcgcatctccggcttcaaagcccgtgaagttgccgaaaccgtgctgggtaaactg
cctaagccgcgctacgccgattatcttccgtttaaagacgccgacggcagcgtgctcgat
caggggattgcgctatggttccctggcccgaactcgttcaccggcgaagatgtgctggaa
ctgcagggtcatggcggtccggtgatcctcgacctgctgttaaaacgcattctgaccatt
cccggcctgcggattgctcgccctggtgagttttccgaacgcgcgtttcttaacgataaa
ctcgacttagcccaggccgaggcgattgccgatcttatcgacgccagttcggaacaggcg
gcccgttcggcacttaactcgctgcaaggcgcattctccgcacgggttaatcatctggta
gaagccctcacccacttgcgcatttacgttgaagcggcaattgatttccccgatgaagag
atcgatttcctctccgacggaaaaattgaagcccagcttaatgacgtgattgccgatctc
gatgcagtgcgtgctgaagcacgtcagggtagtttgttgcgcgaagggatgaaggtggtg
attgccggacgtcctaatgccggtaaatcgagcctgttaaacgcgctggcgggccgtgaa
gcggcaatcgtaaccgatatcgccggaaccacgcgtgacgtgctgcgtgagcatatccat
attgacggaatgccgctgcatatcatcgataccgccgggctacgtgaagccagtgacgaa
gtggaacgtattgggatcgagcgcgcgtggcaggaaattgaacaggccgaccgcgtgctg
tttatggtcgatggcaccacgacagacgccgttgatccggcagagatctggccggaattt
atcgcccgtctgcccgcgaaactgccgatcaccgtggtgcgcaataaagccgatatcacc
ggcgaaacgctgggaataagtgaagtgaacggtcacgcgttaattcgtctgtctgcaagg
actggcgaaggcgtggacgtgctgcgtaaccatctcaaacagagcatgggctttgacacc
aacatggaaggcggcttcctggcgcgccgtcgccacctacaggcgctggaacaggcagcg
gagcatttgcagcaaggtaaagcgcaactgttaggtgcctgggcaggcgaactactggca
gaagagttgcgcctggcgcagcagaacttaagcgaaatcaccggggaatttacctctgac
gacctgctggggcggattttctccagcttctgtattggtaagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (30)   

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