KEGG   Escherichia coli K-12 MDS42: ECMDS42_0647
Entry
ECMDS42_0647      CDS       T02541                                 
Symbol
rhlE
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
ecok  Escherichia coli K-12 MDS42
Pathway
ecok03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ecok00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ECMDS42_0647 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecok03019]
    ECMDS42_0647 (rhlE)
Messenger RNA biogenesis [BR:ecok03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ECMDS42_0647 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 UvrD-helicase UTP25 P-loop_SecA
Other DBs
NCBI-ProteinID: BAL37936
Position
693605..694969
AA seq 454 aa
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK
RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAKSA
SAKPAEKPSRRLGDAKPAGEQQRRRRPRKPAAAQ
NT seq 1365 nt   +upstreamnt  +downstreamnt
atgtctttcgattctttgggtttaagccctgatatcctgcgcgccgttgccgagcagggt
taccgtgaacccacccctattcagcagcaggcgatccctgcggtgctggaaggccgcgac
ctgatggctagcgcccagaccggcaccggcaaaacagcgggctttacgctgccgctgttg
caacacctgatcactcgccagccgcacgccaaagggcgtcgtccggtacgtgcgctcatt
cttaccccgacccgtgaactggcggcgcagattggcgaaaacgtccgtgattacagcaaa
tacctgaacattcgttcgctggtggtgtttggtggtgtgagtattaacccgcagatgatg
aaactgcgtggcggcgttgatgtgctggtggcaaccccgggacgtttgctggacctggaa
catcagaatgcagtgaagctggatcaggttgaaatcctcgtcctcgatgaagctgaccgc
atgctcgacatgggctttatccacgatatccgtcgcgtgttaacaaaactacctgcgaag
cgccagaacctgttattctccgcgaccttctctgacgatattaaagccctggcggaaaaa
ctgttgcacaacccgctggaaatcgaagtggcacgccgcaataccgcgtctgatcaggtg
acccagcacgttcactttgtcgataagaaacgcaaacgcgaattgctgtcgcacatgatt
gggaaagggaactggcagcaggtgctggtgtttacccgtaccaaacacggcgctaaccat
ctggctgaacagctcaataaagatggcatccgtagtgcggcgatccacggcaataaatcg
caaggtgcgcgtactcgtgcgctggctgattttaaatcgggcgatattcgtgtactggtg
gcaactgacatcgctgcgcgcggcctggatattgaagagctgccgcacgtcgtcaactat
gaactgccaaacgtacctgaagattatgtccaccgtatcgggcgtaccggtcgtgcggct
gctaccggtgaagcgttgtcgctggtgtgtgttgatgaacacaaactgctgcgtgatatc
gaaaaactgctgaaaaaagagatcccgcgcattgcgattccgggctatgagccggacccg
tcaatcaaagccgaaccgatccagaacggtcgccagcaacgtggcggcggcggtcgtggg
caaggtggtggtcgcggtcaacagcaaccacgccgtggggaaggtggcgcaaaatctgca
agcgcgaaacctgcagaaaaaccgtctcgccgcctcggcgatgccaaaccggcaggcgaa
caacaacgtcgccgccgtccgcgtaaacctgccgctgcgcagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system