KEGG   Encephalitozoon cuniculi: ECU03_0290
Entry
ECU03_0290        CDS       T00105                                 
Name
(RefSeq) uncharacterized protein
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
ecu  Encephalitozoon cuniculi
Pathway
ecu03020  RNA polymerase
ecu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ecu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ECU03_0290
  09124 Replication and repair
   03420 Nucleotide excision repair
    ECU03_0290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecu03021]
    ECU03_0290
   03400 DNA repair and recombination proteins [BR:ecu03400]
    ECU03_0290
Enzymes [BR:ecu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ECU03_0290
Transcription machinery [BR:ecu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     ECU03_0290
DNA repair and recombination proteins [BR:ecu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      ECU03_0290
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7 RNA_pol_Rpb1_6 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 858702
NCBI-ProteinID: NP_597540
UniProt: Q8SSC4
Position
III:complement(33938..38737)
AA seq 1599 aa
MFEAKVKKQIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYL
CQSCGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPRKGIKSTLSN
VWGMSKGRSVCEGEVLDNGRSGCGNKQPVIKREGLTLVAFMKGEESNEGKVMLNGERVYS
IFKKISDEDSVYMGFDLKYSRPEWMILTVLLVPPPAVRPSIVMEGSLRGEDDLTHKLADI
IKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATFIDNDIGGLPQALQKSGRPLKSLSARL
KGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLE
KLVRAGPNEHPGANYVLRSDGQKIDLNFNRSDIRLEEGYVVERHMQSGDVVLFNRQPSLH
KMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSRQI
ISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYAVNLEFCDIPLGDAVQTGLR
KGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLPNLNYIGLSSEHDDDDKENIGDTRVII
QDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGI
GDTIADPKTVKVVESAIRKAKEEVSALIENARQNRLERLPGMTMKESFESHLNLVLNRAR
DVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPH
FVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALE
DAIVRQDESVRSGNGLVYQIKYGEDGFDATFLESQKVDVKNFTKRYYIDMFGTEELEIKH
GQVSEEVYGMLSSDVDLQKLLDQEYEWLVGEIFEGPPILSVGEVDIERDYKVRDIYQSAV
MSPCNFTRILATAKRTFHLSTGDVSPYYILEAHKHLTTSNRILNVLIRTNLSVKRVLLEH
RLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVASTVTM
GVPRLKEIFNVTKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDLCLFSEIYYDP
EITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLVVDRAKLVGRGINLEYVAMFIRK
ELGGGAHVICSDENAVNMVVRVRTTKSEDESLNFYTTALNSLLRLQLGGYKNVKKVYISE
DKDRKEWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILRELTIVID
GNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILLDAALVSE
KNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDKAIPLSNPVFKPNEPATPVISTPSSD
SFSISSGNWSPTHLEMAYSRDLGERLSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSVSMSSFSNKNKSKNQDGDKKRRNDGSF
NT seq 4800 nt   +upstreamnt  +downstreamnt
atgtttgaggcgaaagtaaagaagcagatcaagtcgatacagttcgggttgttttcacca
gatgaggtgagaaatggaagtgttgctttgatcgtgcacccggaggtcatggaaggtggg
gttccaaagaccgggggtctgattgatctgaggatgggaacgaccgacagaatgtatctc
tgccaaagctgcggaggagataacttctcgtgtccagggcactttgggcatatcgaactt
acaaagcctatgttccatgttggatacatctccaagattaagaaggttctggaatgtgtt
tgtttctattgttccaaaattaagattccaaggaaggggataaagtcgacgctgagcaat
gtatggggcatgagtaagggccggtctgtgtgcgagggagaggttctcgacaacggaaga
agcggatgcggaaacaagcagcctgtgataaagagggagggcctgactcttgttgccttt
atgaaaggagaagaaagcaacgagggaaaggtcatgctgaatggggaaagggtctatagt
atatttaagaagataagcgacgaggacagtgtgtacatggggtttgaccttaagtacagc
aggcctgaatggatgatactcactgtgttgcttgttccgccacctgcagtacggccttcg
attgtcatggagggctcactgcgtggagaagacgatctcacgcacaagctggcagacatt
ataaagtcgaatggatatctgaagaagtatgagcaggaaggggcgccagggcacattgtt
cgagattacgagcagttgctgcagttccatgttgcgacatttatagacaacgacatcggc
gggttgcctcaggcgctgcagaagagtggaaggccgctgaagtcgctgtctgccaggctg
aagggtaaggaaggaaggatccgagggaaccttatggggaagagggtggacttcagtgca
agaacagtgataacgccagacccaaacatatccctggaggaggtaggggttcctcttgag
attgcaaagatccatacatttcccgaaaaggttacatcgttcaacatagatagactggaa
aagcttgtgagggcagggcctaacgagcatccgggggccaactatgtgctcaggtctgat
gggcagaagatagacctgaactttaacaggagcgatatacggctggaggaggggtatgtt
gtggagagacacatgcagtctggagatgttgttcttttcaatagacagccctcccttcac
aaaatgtcgatgatggcgcactatgccagggtgatgggcaacaaaacattccgactgaat
ctcagtgttacttctccttacaatgcagacttcgatggagacgagatgaatcttcacatg
cctcaaagctacacatccaaggcagagctggaggagctggcgcttgtatccagacagatt
atttcgcctcagtctaacaagcctgttatgggtattgtgcaggatacacttacgggcctg
aggctgtttaccttgcgagacacgtttctaaatgagagggaggttatgtcgctgttgtat
gcagtgaatttggagttctgcgacattcctctgggagatgcagtgcagacagggctccgg
aagggaaaggactacgatatcatgaaaatattgagaaaacccgccatagcaaagcctatg
aggctgtggacaggaaagcaggtactaagctttgttcttccgaatctgaactacatcggg
ctttcttcggagcacgacgatgatgataaagagaatatcggcgacaccagggttatcatc
caggatggatacattcattccggggtgattgacaaaaaggcggctggagcaacccaagga
gggctagtacacataattttcaacgactttgggcccaaaagagctgcacagttttttgat
ggggtgcagagaatgatcaacgcctttatgactggaatccataccttttcgatgggaata
ggcgacacgattgcagatcccaagacggtgaaggtggttgagtctgcgatcagaaaagca
aaggaagaggtgtctgctctcattgagaatgcgcggcagaaccgccttgaaagacttccc
ggaatgacgatgaaggaaagttttgagagccatctaaacctggtgttgaatagggcaaga
gacgtgagcgggacaagtgcacagagaagcctcagtgaaaacaataacatgaagacaatg
gttcttgcaggatcgaagggatcgtttattaacatttcacaggtgactgcctgtgtgggg
cagcagaatgttgagggaaagcgcattccctttggattctcgcaccgaacacttccacac
tttgtaaaagacgattacactggcaagagcagaggatttgttgagaacagctatttgacg
gggttagacccggaagagtttttcttccatgcaatgggaggaagagaggggcttatagac
acagcgattaaaacggcagagactgggtatatccagagaaggctggtgaaagcccttgaa
gatgccattgtgaggcaagatgagagtgtccgaagcggaaatggcctggtataccagatc
aagtacggggaggatgggtttgatgccaccttcctagaatctcaaaaggtcgatgtaaag
aacttcacaaagagatattacatcgatatgtttggtaccgaggaactggaaattaagcat
ggacaagtttcagaggaggtttatggaatgctctcatcggacgtcgatctccaaaagctc
ctggaccaggaatacgaatggctggttggggagatatttgaaggccctccaatactctca
gtgggagaagttgatatagagcgcgactacaaggtcagggatatttaccagagcgcagtg
atgagtccttgtaacttcacccgtatcttagccactgcaaaaaggacatttcatctttcc
acaggcgatgtttctccttattacatacttgaagctcataagcatcttacaacatccaac
aggatcctaaatgtactcataaggactaatctgagtgtaaaaagggttcttcttgagcat
aggctgaatacagaggcatttaattgggttgtggaagtgatagatgcaaagattctgaag
gccaaaataacgccgaatgaaatggtggggacgctggcagcacagtctgttggagagcct
gcaacgcagatgacactgaacacattccatcttgcaggggttgcctccacggtgaccatg
ggggttcccaggctcaaagagatttttaatgtaacaaagaacttgaagacgccgtctatg
aaaatataccttgatagggagcatggcaagagtatcgaggcagcaaagacaatccagaat
gagattgaatgcctcactgtgaaggatctatgccttttttccgagatctactacgaccct
gagataacagggactgagatttctgatgacaaggatttcgtggaagcatatttcgagttt
ccagatgaggatgttgacttctcgtgtctgtctccatttctaatgaggcttgttgtggat
agagctaagcttgttggaaggggaataaatctggagtatgttgcaatgtttatccggaaa
gagctaggaggtggtgcacatgttatctgcagtgatgagaatgcagtcaacatggtggta
agagttcggacaacaaagtctgaggacgagtccttgaacttctacacgactgcactcaac
tcgttgctaaggcttcaacttggaggatacaagaatgttaagaaagtttacataagcgaa
gacaaggatagaaaagagtggtatctgcagaccgatgggatctgcctctctcagattcta
gggaacccggcagtgaacagcagacttacaatttccaacgacctggttgagattgcggag
accttgggaatcgaggctgcgcgagagtctattcttagggagctgacgattgtgatagac
ggaaacgggtcgtatgtcaattacaggcacatgagcttgctagccgatgtgatgaccatg
agagggtatttgtgcggaataactaggcatggtgttaacaaggttggtgccggagcactg
aagagaagctcctttgaggagactgtggagattctcttggatgcagcactggtgtctgaa
aagaatatatgcagaggaataacagagaatattatgatgggacagctggcgccgatggga
actggaaacattgagattatgctagacatgaagaaattggacaaggccatccctttgtca
aatcccgtatttaagccgaatgagcctgctacgccagtgatcagcactccttcatccgat
tccttttccatcagcagcgggaactggagtcccacacatcttgaaatggcatattccagg
gatctgggcgaaagattgtcacctacaagcccctcctactcaccgacgagtccctcctac
tctcctacaagcccttcatactcacctacgagtccctcctactctcctacaagcccttca
tactcaccgacgagtccctcctactctcctacaagcccttcatactcaccgacgagtcca
tcatactctcctacaagcccttcatactctcctacaagcccttcatactcaccgacgagt
ccatcatactctcctacaagcccttcatactcaccgacgagtccctcctactctcctaca
agcccttcatactcaccgacgagtccatcatactcagtgtcgatgtctagcttctcaaac
aaaaataagagcaagaatcaagatggtgataaaaagaggagaaatgacggttccttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (74)   

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