KEGG   Escherichia coli APEC O1 (APEC): APECO1_2398
Entry
APECO1_2398       CDS       T00425                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
ecv  Escherichia coli APEC O1 (APEC)
Pathway
ecv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ecv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    APECO1_2398
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ecv03400]
    APECO1_2398
DNA repair and recombination proteins [BR:ecv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     APECO1_2398
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      APECO1_2398
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_16 AAA_29 nSTAND1 RsgA_GTPase DnaJ_CXXCXGXG AAA_23 AAA_25 AAA_21 NACHT Viral_helicase1 cobW ExoX-like_C
Other DBs
NCBI-ProteinID: ABJ03538
UniProt: A0A0H2Z4Q6
Position
complement(4612124..4614946)
AA seq 940 aa
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC
PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP
KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL
SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY
MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH
VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV
PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR
QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE
SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML
NT seq 2823 nt   +upstreamnt  +downstreamnt
atggataagatcgaagttcggggcgcccgcacccataatctcaaaaacatcaacctcgtt
atcccccgcgacaagcttattgtcgtgaccgggctttcgggttctggcaaatcctcgctc
gctttcgacaccttatatgccgaagggcagcgccgttacgttgaatccctttccgcctac
gcgcggcagtttctgtcactgatggagaagccggacgtcgaccatattgaagggctttct
cctgccatctcaattgagcagaaatcgacgtctcataacccgcgctctacggtggggaca
atcaccgaaatccacgactatttgcgtctgctgtacgctcgcgttggtgagccgcgctgc
ccggaccacgatgtaccgctggcggcgcaaaccgtcagtcagatggtggataacgtgttg
tcccagccggaaggcaagcgtctgatgctgctcgcgccaatcattaaagagcgcaaaggc
gaacacaccaaaacgctggagaacctggcaagccagggttacatccgtgctcgtattgat
ggcgaagtctgcgatctttccgatccgccgaaactggaactgcaaaagaaacataccatt
gaagtggtggttgatcgcttcaaagtgcgtgacgatcttacccaacgtcttgccgagtcg
tttgaaaccgcgctggagctttccggtggtaccgcggtagtggcggatatggacgacccg
aaagcggaagagctgctgttctccgccaactttgcctgcccgatttgcggttacagtatg
cgcgagctggaacctcgcctgttttcatttaacaacccggcgggagcctgcccgacctgt
gacggtcttggcgtacagcaatatttcgatcctgaccgcgtgatccagaatccggaattg
tcgctggctggcggtgcgatccgtggctgggatcgccgcaacttctattatttccagatg
ctgaaatcgctggcagatcactataagttcgacgtcgaagcgccgtggggcagcctgagc
gcgaacgtgcataaagtggtgttgtacggttctggcaaagaaaacattgaattcaaatac
atgaacgatcgtggcgatacctccattcgtcgtcatccgttcgaaggcgtgctgcacaat
atggagcgccgttataaagagacggaatccagcgcggtacgtgaagaattagccaagttt
atcagcaatcgtccgtgcgccagctgcgaaggaacccgtctgcgtcgggaagcacgccac
gtgtatgtcgagaatacgccgctgcccgccatctccgacatgagcatcggtcatgcgatg
gaattcttcaacaatctcaaactcgcaggtcagcgggcgaagattgcagaaaaaatcctt
aaagagatcggcgatcgtctgaaattcctcgttaacgtcggcctgaattacctgacactt
tcccgctcagcagagacactttccggcggtgaagcccagcgtattcgtctggcgagccag
attggtgcaggcctggttggcgtgatgtacgtgctggatgagccgtctatcggcctgcac
cagcgcgataacgagcgcctgttgggtacgcttatccatctgcgcgatctcggtaatacc
gtgattgtggtggagcacgacgaagacgcgattcgcgccgctgatcatgtgatcgatatc
ggtccgggtgcgggtgttcacggcggtgaagtggtcgcggaaggtccactggaagcgatt
atggcggtgcctgagtcgttgaccgggcagtacatgagcggtaaacgcaagattgaggtg
ccgaagaaacgcgtacccgccaatccagaaaaagtgctgaaactgacgggcgcacgcggc
aacaacctgaaagacgtgacgctgacgctgccggtaggtctgtttacctgcatcacaggg
gtttcaggttccggtaaatcgacgctgattaacgacacactgttcccgattgcccaacgc
cagttgaatggtgcgaccatcgccgaaccggcaccgtatcgcgatattcagggactggag
catttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccgcgttctaac
ccggcgacctataccggcgtgtttacacctgtgcgcgaactgtttgcgggcgtaccggaa
tcccgtgcgcgcggctatacgccaggacgtttcagctttaacgtccgtggcggacgctgc
gaggcctgtcagggcgacggcgtgatcaaagtggagatgcacttcctgccggacatttac
gtaccgtgcgaccagtgcaaaggcaaacgctataaccgtgaaacgctggagattaagtac
aaaggcaaaaccatccacgaagtgctggatatgaccatcgaagaggcgcgtgagttcttt
gatgcggtgccagctctggcgcgtaagctgcaaacgttgatggacgttggcctgacgtac
attcgcctcgggcagtccgcaaccacactttctggtggtgaagcccagcgcgtgaagctg
gcgcgtgagctgtcaaaacgcggcaccgggcagacgctgtatattctcgacgagccgacc
accggtctgcacttcgccgatattcagcaactgctcgacgtactgcataaactgcgcgat
cagggcaataccattgtggtaattgagcacaatctcgacgtgatcaaaaccgctgactgg
attgtcgacctgggaccggaaggcggcagtgggggcggcgaaatcctcgtctccggtacg
ccagaaaccgtcgcagagtgcgaagcttcgcatacggcgcgcttcctcaagccgatgctg
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system