KEGG   Escherichia coli APEC O1 (APEC): APECO1_3958
Entry
APECO1_3958       CDS       T00425                                 
Symbol
rpoE
Name
(GenBank) RNA polymerase, sigma 24 (sigma E) factor
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
ecv  Escherichia coli APEC O1 (APEC)
Brite
KEGG Orthology (KO) [BR:ecv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecv03021]
    APECO1_3958 (rpoE)
Transcription machinery [BR:ecv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     APECO1_3958 (rpoE)
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_20 HTH_28
Other DBs
NCBI-ProteinID: ABJ01993
UniProt: A0A0H2Z1P8
Position
complement(2863512..2864120)
AA seq 202 aa
MEIWFGETLPRMSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDV
VQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESG
GALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGT
VRSRIFRAREAIDNKVQPLIRR
NT seq 609 nt   +upstreamnt  +downstreamnt
gtggaaatttggtttggggagactttacctcggatgagcgagcagttaacggaccaggtc
ctggttgaacgggtccagaagggagatcagaaagcctttaacttactggtagtgcgctat
cagcataaagtggcgagtctggtttcccgctatgtgccgtcgggtgatgttcccgatgtg
gtacaagaagcttttattaaagcctatcgtgcgctggattcgttccggggagatagcgct
ttttatacatggctgtatcggattgctgtaaatacagcgaaaaattacctggttgctcag
gggcgtcgtccaccttccagtgatgtggatgccattgaagctgaaaacttcgaaagtggc
ggcgcgttgaaagaaatttcgaaccctgagaacttaatgttgtcagaagaactgagacag
atagttttccgaactattgagtccctcccggaagatttacgcatggcaataaccttgcgg
gagctggatggcctgagctatgaagagatagccgctatcatggattgtccggtaggtacg
gtgcgttcacgtatcttccgagcgagggaagctattgataacaaagttcaaccgcttatc
aggcgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (14)   

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