KEGG   Edaphobacter sp. 12200R-103: GWR55_13925
Entry
GWR55_13925       CDS       T06408                                 
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
eda  Edaphobacter sp. 12200R-103
Brite
KEGG Orthology (KO) [BR:eda00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:eda03016]
    GWR55_13925 (thpR)
Enzymes [BR:eda01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     GWR55_13925 (thpR)
Transfer RNA biogenesis [BR:eda03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    GWR55_13925 (thpR)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: QHS52692
UniProt: A0A6B9YSF0
Position
complement(3352212..3352775)
AA seq 187 aa
MKMRLFVGIALDPALTDALKRLTASLRRAGDGLRWSSPESWHITLQFLGATDPQCYESLL
ARLSEIHRPPLAIHLGVPDVFERAGVFHIGVLPSQHLTALERHVVAATALCGIRPEDHPY
HPHITLVRSKGHEGRRGLHALLEHLHSPHTLPSFTAHEFLLYQSLPTPTGSRYEIRARFP
LSSPPAQ
NT seq 564 nt   +upstreamnt  +downstreamnt
atgaagatgcgtctcttcgtcggaatcgccctcgaccccgcactcaccgatgcgctcaaa
cgcctcaccgcatcgctgcgccgcgccggcgatggcctgcgctggtccagccccgaatcc
tggcacatcactctccagttcctcggcgcaaccgatccgcagtgctacgaatctctcctc
gcccgcctcagcgagattcaccgtccaccgctcgcgatccacctcggcgtccctgacgtc
ttcgaacgcgccggcgtctttcacatcggcgtgctgccctcacagcacctcaccgcactc
gagcgccacgtcgtagccgccacggcactctgcggcatccggcctgaagaccacccctac
catccccacatcaccctcgtgcgcagcaagggccatgaaggacgccgcggactccacgca
ctgctcgagcaccttcactcgccccatacgcttccgtccttcaccgcgcacgaattcctc
ctctaccagagcctccccactcccaccggctcacgctacgagatccgcgcccgcttcccc
ctgtcctcgcctccagcgcaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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