KEGG   Escherichia fergusonii: EFER_1178
Entry
EFER_1178         CDS       T00811                                 
Symbol
sdiA
Name
(GenBank) DNA-binding transcriptional activator
  KO
K07782  LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
Organism
efe  Escherichia fergusonii
Pathway
efe02020  Two-component system
efe02024  Quorum sensing
efe02026  Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:efe00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    EFER_1178 (sdiA)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    EFER_1178 (sdiA)
   02026 Biofilm formation - Escherichia coli
    EFER_1178 (sdiA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:efe03000]
    EFER_1178 (sdiA)
Transcription factors [BR:efe03000]
 Prokaryotic type
  Helix-turn-helix
   LuxR family
    EFER_1178 (sdiA)
SSDB
Motif
Pfam: Autoind_bind GerE HTH_20 Sigma70_r4_2 HTH_23 Sigma70_r4 HTH_38
Other DBs
NCBI-ProteinID: CAQ88705
UniProt: B7LP49
Position
1217653..1218408
AA seq 251 aa
MSLAPWDIAICMHDIEFFTWRRTMLSRFQEMASAEDVFQELQFQTQKLEFDYYSLCVRHP
VPFTRPKVAYYSTYPEAWVSYYQQHNFLAIDPVLKPENFSQGHLLWDDALFSEAQPLWDA
ARAHGLRRGVTQYLMLSNRALGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQ
HEMVMTPAMRFSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQ
VACYAAATGII
NT seq 756 nt   +upstreamnt  +downstreamnt
atgagtttagcgccatgggatattgcaatttgtatgcatgatattgaatttttcacctgg
cgacggactatgctgtcacgctttcaggaaatggcttccgctgaagatgtttttcaggaa
ttacaatttcaaacacaaaaactggaatttgattattattctttgtgtgtccgtcatccc
gtcccgtttacaaggcccaaagtggcgtattattcaacttatcctgaagcctgggtgtct
tattaccagcagcacaactttttagcgatcgatcccgtcttaaagccagaaaactttagt
cagggccatctgttgtgggatgacgcattgtttagcgaagcacaaccactgtgggatgcg
gcgcgggcgcatgggttgcgtagaggggtaacgcaatacttgatgttgtctaatagagcg
cttggttttctttcgctttcccgcatgagtgctcgtgaagggccaattgcccatgatgaa
ctggagttgaaactgcaacttctggtacgtgaaagtcttaatgttctggcacgattgcaa
cacgagatggtgatgacgcccgcgatgcgttttagtaaacgggaaactgaaatcctgcgc
tggacagcagaagggaagacctcagcagagatcgccatgattttgtcgatatcagaaaat
accgtcaattttcatcaaaagaatatgcagaaaaaattcaatgcccccaataaaacgcag
gtggcctgttatgcggcggcaacggggataatctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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