KEGG   Candidatus Endolissoclinum faulkneri L5: P856_152
Entry
P856_152          CDS       T04221                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
efk  Candidatus Endolissoclinum faulkneri L5
Pathway
efk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:efk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    P856_152 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:efk03021]
    P856_152 (rpoC)
   03400 DNA repair and recombination proteins [BR:efk03400]
    P856_152 (rpoC)
Enzymes [BR:efk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     P856_152 (rpoC)
Transcription machinery [BR:efk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     P856_152 (rpoC)
DNA repair and recombination proteins [BR:efk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      P856_152 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 DUF294 CBM_3
Other DBs
NCBI-ProteinID: AHC73390
UniProt: V9TVM6
Position
complement(222366..226466)
AA seq 1366 aa
MNELVNIFGRPSGLQRFDTIQISIASQDRMKSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGITCEKCGVEVTLSKVRRERMGHIDLASPVVHIWFLKSL
PSRIGLLLDMTLKDLEKVLYFENFMVTDPLLSPLKDKQLLSEEEYYQAQDEYGNNAFVAQ
MGAEALKTILSRLDMEATRSAISVELRETGSEARRKKLVKRLKIIEAFQESDSRPEWMIM
DVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSGMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
DLLLHQCGLPKKMALELFKPFIYSKLELYGMASTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIILGLYHLTMERENQPGEGMIFADPYEVDHAIDN
GIVTLYTKIQARIATYDVNGNKVVRRVKTTPGRLKLSLLLPDSPKLGFEMINCLMTKKEV
SNIIDMVYRHCGQKETVVFADRLMSLGFSHACRASISFGKDDLVIPDAKQSLVESANEEV
KQLEQQYLDGLITQGEKYNKVVDVWSRCTDQVADRMMSVIKEDDGVNPVNAVWMMAHSGA
RGSANQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDCIVTEVDCGTSNGITVKPVIDGGEVIEPLGDRILGRTTVNEVLD
PVNGAVIIKKGQTIDETMVEEIERANIDSVLIRSVLTCRTHPGVCAVCYGRDLARGTLVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSTVEATFGTIVQLHNRSVVTNSD
GVLIVMNRNTEIILLDEQGRERARHRVPYGAKLFVDDGVVVESGYKMAEWDPYTIPIITE
REGITHYVDLVEGLSMREVTDEATGISSRVVIDWKQQAKGSELKPRITLRNTSGELIQLS
NGLEARYFMSVDAVLSVDNGSQVKAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKD
FAVITETAGKIEFGKDYKTKRRVIVRPVEKNATPIEYMIPKGKHLAVQEGDFVQKGDMLL
DGARVPHDILGIMGIEALADYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKVEVIKTGD
TTLLLGENIDRDEYKKANDKALASDLHPAVAKPVLQGITKASLQTKSFISAASFQETTRV
LTEAAVSGKEDGLDGLKENVIVGHLIPAGTGSVMSRLRRVAADRDQ
NT seq 4101 nt   +upstreamnt  +downstreamnt
ttgaacgagttagtgaacatttttggtcggccgagcggactacaaagatttgacactatc
caaatctcaattgctagccaagatcgcatgaaatcatggtcttttggtgaaattaaaaaa
ccagagactattaattaccgaacttttaaacctgagcgcgacggtttgttttgtgctaga
atcttcggtcctattaaggattacgagtgtttatgtggcaaatacaaacgtatgaagtat
cgcggtatcacctgtgagaaatgtggtgtggaggttacactttcaaaggtacgccgtgag
cgaatgggtcatattgatctggcttcacctgtcgtgcatatttggtttcttaaatcacta
cctagtcgcatcggtcttctgctagatatgactctaaaagatctagaaaaagttttgtac
tttgagaactttatggttactgaccctctgttatctccattgaaagacaagcagcttctc
agcgaagaagagtattatcaagcacaagatgaatatggtaataacgctttcgtcgcccaa
atgggtgctgaagctctgaaaaccattctttctcgcttagacatggaggctacacgtagt
gcaattagcgtagaattacgcgaaactggttctgaagctaggcgtaaaaaactagttaag
cgcttaaaaataattgaagcatttcaagaatctgactctcgcccagaatggatgatcatg
gatgtaatcccagtgattccacctgagttgcgtcccctggtgccattggatggtggtcgc
tttgctacatccgatttaaacgacctgtatcgccgtgtgattaatcgcaacaaccgttta
aagcgtttgatagaacttcgtgcgccagatatcattgtacgcaatgagaagagaatgctg
caagaagcagttgatgctttgtttgacaatggccgtcgcggacgcgttatcacaggtgcc
aataagcggccattaaagtcgcttagtgggatgctaaaggggaaacagggtcgctttcgt
caaaatttattaggtaagcgtgtcgactattcgggccgttctgttatagtagtgggtcca
gatctactattacatcagtgtgggctgccaaaaaaaatggcattggagttgtttaagccg
tttatctattcaaagcttgagctttacggtatggccagcaccataaaggctgcaaagcgt
atggttgaaaaagagcgccctgaggtttgggatattttggaagaggtgattcgcgaacac
ccagttatgttaaatcgtgcacctaccttgcatcgtcttggcattcaagcatttgagcca
aagcttgttgaaggcaaagcaattcaacttcatccgctagtttgtacagcgttcaatgct
gattttgacggcgaccaaatggcagttcacgtaccgttatctttggaggctcaactggaa
gctcgtgtgcttatgatgtcaaccaacaatattttaagtccagccaacggaaagccaatc
attgttccatcacaagacattatcctgggactctaccacttaactatggagcgcgaaaat
caaccaggcgaaggtatgatatttgctgatccatacgaagttgatcatgccattgataac
ggtatagtaactttgtatacaaaaatacaagctcgcatagctacatatgatgtaaatggc
aacaaggtagttaggcgtgtaaaaaccacacctggcagacttaagttatctttgctgctc
ccggatagtccaaaattaggcttcgaaatgattaactgcctgatgacaaaaaaggaagta
tctaacattattgacatggtgtatcgtcactgtggacaaaaagagacagtagtttttgca
gatcgtttaatgagtttagggtttagtcatgcttgtcgtgcaagcatttcctttggtaaa
gatgacttagtaattccggatgctaaacaaagtttagttgagagtgctaatgaggaagtc
aagcaacttgagcagcaatatcttgatggtctgattactcaaggtgaaaaatacaacaag
gtagttgatgtgtggtcccgttgcacagatcaagtagccgatagaatgatgtcagtaatt
aaggaggatgacggcgtaaatcctgtaaatgccgtatggatgatggcacattccggtgca
cgtggttctgctaatcaaattaaacaactagccggtatgcgcggcctgatggctaagcca
tccggcgaaatcattgaaactcctatcatttctaactttaaagaaggtttaactgtcctt
gagtactttaattcaactcatggtgcccgtaaggggctagctgacactgcgctcaagaca
gcaaattcaggttatttaacccgtcgtttggtcgacgttgctcaggattgtattgttaca
gaagttgattgtggtacctcaaacggtataaccgtaaaaccagtgatagacggaggtgaa
gtaatagaacctttaggagaccgtatcctcggtcgtactacagtgaatgaagtgctagat
ccagttaatggtgcagtaattattaaaaagggccaaactatagacgaaacaatggttgag
gaaattgaacgcgcaaatattgattcggttttgatacgctcggttctaacatgtagaaca
catcctggtgtctgtgctgtctgttatggccgtgatttggctcgtggtacactggtaaac
attggcgaggcagttggtgtaattgccgctcaatcaatcggtgagcctgggacacagcta
actatgagaacattccatataggtggtgctgctcaacgcggtgctgagcaatctactgtt
gaggctacttttggtacaattgtacagttacataatcgcagtgttgttactaactctgat
ggagtattaatagtaatgaatcgtaacactgaaatcattttgcttgacgagcaaggacgt
gagcgagcacgtcatcgcgtaccttacggagctaaattatttgtcgatgacggtgttgtt
gtcgagtctggctacaagatggcagaatgggatccttataccatccccattatcactgag
cgtgaaggtattactcattacgtcgacttggtagaaggcttgtccatgcgcgaggtaaca
gatgaagctactggtatctcgtctcgtgtagtgattgactggaagcagcaggccaaagga
agcgagttaaagccacgcataactttacgtaatacctcaggtgagttaatccaactttct
aacggcttggaagctcgctatttcatgtcagtcgatgctgtattatccgttgataatggt
tcgcaagtaaaagccggcgacgttctagcacgtatcccgcgtgaatcctcaaaaactcgt
gacatcactggtggtttaccacgcgtggctgaactcttcgaagctcgtcgtccaaaggac
tttgctgtaattacagaaactgccggtaaaatagagtttggtaaagattataaaaccaaa
cgtcgggttatagtacgtccagtggaaaaaaacgctactccgatagagtatatgatccca
aaaggcaagcatttagctgttcaagaaggagattttgtacaaaaaggtgatatgttactt
gatggagcacgagttccgcatgatattctaggcattatgggtattgaagctctagctgac
tatcttattaatgaaattcaagaagtttatcgtttgcaaggggttaagattaacgataag
catatcgaagtaattgttcgccagatgttacaaaaagttgaagtaatcaaaactggcgat
acaactttacttttaggcgaaaacattgaccgtgacgaatacaagaaagctaatgataaa
gccttagcgagtgatttgcacccagctgtagctaagccggtacttcagggtatcactaaa
gcctcacttcaaacaaagtcttttatctctgcagcgtcttttcaagaaactactcgtgtt
ttaactgaagctgctgtttccggaaaagaagatggtctagacggactaaaggaaaacgtc
attgtcggtcaccttatacctgcaggcacggggagtgttatgagccgtctgcgtagagta
gctgcagatcgtgatcaatga

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