KEGG   Candidatus Endolissoclinum faulkneri L5: P856_822
Entry
P856_822          CDS       T04221                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
efk  Candidatus Endolissoclinum faulkneri L5
Pathway
efk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:efk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    P856_822 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:efk03021]
    P856_822 (rho)
   03019 Messenger RNA biogenesis [BR:efk03019]
    P856_822 (rho)
Transcription machinery [BR:efk03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     P856_822 (rho)
Messenger RNA biogenesis [BR:efk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     P856_822 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N Spore_III_AA AAA_25 OB_RNB AAA_22 NACHT AAA DUF1269
Other DBs
NCBI-ProteinID: AHC74020
UniProt: V9TXG7
Position
complement(1515589..1516848)
AA seq 419 aa
MNLQELKAKTPADLLAYAEELEIENVSTLRKQDMMFAILKQLAENDLPISGQGVLEIIPD
GFGFLRAPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKDGERYFALLKVNQIN
FEDPEAIRHRINFDNLTPLFPNEKLNLENAFKTENKDFTSRVISLISPLGKGQRALLVAP
PRTGKTVMLQNVAHAISEGNTGVYLIVLLIDERPEEVTDMVRSVHGEVISSTFDEPASRH
VQVTEIVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGIDANALQRPKR
FFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNAEVILDRKLADKRTFPAID
ITKSGTRKEELLVNKSTLSKMWVLRRILMQMGAIDGMEFLLDKLKNSKNNQEFFDQMNS
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatcttcaagaacttaaagccaaaacgcctgctgatctcctcgcttacgcggaagag
cttgaaattgaaaacgtaagtaccttgcgcaagcaagacatgatgttcgctattcttaag
caattagcagaaaatgatttacctatttcaggccaaggagtacttgaaattattcctgat
ggatttgggtttctccgtgctccagagtctaattatttacctggtccagacgatatatat
gtttctcctagtcaagtgcggcgttttggtttacgtactggagatacagttgaggggcaa
attcgttcaccaaaagatggtgagcgttattttgctttacttaaagttaatcaaattaac
ttcgaggatccagaagctattcgtcacaggattaattttgataatcttaccccgttattt
ccgaacgaaaaattgaatttagaaaatgcatttaaaactgaaaataaagattttacatca
agagtgattagtttgatttctcctctaggcaagggtcaacgtgcattgctggtagcaccg
ccacgtactggtaaaacagtaatgctacaaaacgttgctcatgcgatttcagaaggtaat
actggtgtatacctcattgtattactaatcgacgaacgtccagaagaagtgacagatatg
gtacgctctgtgcacggtgaggtaatatcttcaacatttgacgaaccagcttctcgtcat
gttcaggttactgagattgttattgagaaggctaaacgtcttgttgagcataagcgagat
gttgtaattttgctagattctattacacgccttgctcgtgcctataataccgttgtccca
tcttctggaaaagtgctaaccggcgggatagacgctaacgcactacagcgcccaaagcgt
ttttttggtgcagctcgtaatattgaggaaggtggatcccttactataattgctacagct
ttagttgatactggatcaagaatggacgaagtgatatttgaagaatttaagggcactggt
aatgctgaagtgattcttgatcgcaaactcgctgataaacgaaccttcccagcaattgat
attactaaatcaggcacacgtaaagaagaattgttagtcaataagtctactctgtcaaag
atgtgggttttacgccgtattcttatgcaaatgggtgctattgatggaatggaatttttg
ctcgataagttaaaaaattctaaaaacaatcaagaatttttcgatcaaatgaattcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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