KEGG   Echinococcus granulosus (hydatid tapeworm): EGR_03377
Entry
EGR_03377         CDS       T05553                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
egl  Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:egl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EGR_03377
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egl03019]
    EGR_03377
Enzymes [BR:egl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     EGR_03377
Messenger RNA biogenesis [BR:egl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     EGR_03377
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     EGR_03377
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4
Other DBs
NCBI-GeneID: 36339092
NCBI-ProteinID: XP_024353027
Position
Unknown
AA seq 722 aa
MCAQQERNITDIAKVLNTPTSFPVRRSNNLNEFTMQSRLISEEEARNRARWFRVNLTGPL
KNFPRNICYLTYITTLVIKNNNLERLPPELGNLVNLVNLDASYNRLKVLPSTIGELTDLR
ALILNDNQISDLPLEVARLLNLRLLNLQNNPLSQESAALYGDGTESFVRRLVRHYLDIYS
RQHIGSAPPHRQWRQFGTPSRNGYRLTVMCYNVLSANYATHSQYPYCPSWAIDWEYRRRG
ILEELRQYEPNIICLQEIDTDQFETVFVPELAKNNYEGVFLPKSRSRTMEPALARKVDGC
AIFWLSEKFTKVAEFHHEFMISCSSVADHPSPLLINRVMTRDNVAIGVVLEIKNSGTNGR
RFCVTTGHIHWDPEHSDVKLIQAILWTAELWSRLERFNGDCEKPGLGASRMPVILCGDFN
SLPDSGVVEYLSTGSVPTTHVEFLNFGFNYHFEDWKLLEKWAYEGNILRHRFNFDRAYRG
NANDGMRVTNLTYDFKGMIDYIFFSRNHFRLLGSLDQIPDSWFVEERVLGCPHIHVPSDH
FSLLVELDLLGQPGRGLAISDPAESLVPISSAPLVAAASATASTTAPTDTTSMVTNISST
TPTTATLSTASSGAIGSTSTGTTGSTTSASMSGAAASTATASSATNSPKPKGSSGGPSGL
LYSGLRCKMLHGVGVLTGETVDDCKCCQKRCCEDSRYGMRVEAWLAAAGSLLNRCEMAKE
GL
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgtgtgcacaacaagaaaggaacattacagatattgcgaaagtccttaacacacccacc
tcctttccggttcgccgttcaaacaacctaaatgagttcactatgcagtcacgcctcata
agcgaggaggaagctaggaatcgtgccagatggtttcgcgttaatctcacaggtccgctg
aaaaattttccccgcaacatctgctacctaacctacatcacgacattggtgattaagaat
aacaacttggagcgcctaccgccagaactggggaacttggtgaaccttgtcaatttggat
gccagttacaatcgattgaaggttttgccatccaccattggtgagctcaccgatctcaga
gctctgattctcaatgacaaccaaatatcagatctccccctcgaggttgctcgtctgcta
aaccttaggctcttaaatcttcagaacaaccccttgagtcaggagtcggcggctctctat
ggagacggaactgagtcctttgttcgacgattggtacggcattacctcgacatctactcg
cggcagcacatcggctccgcccctcctcatcgacagtggcgtcagtttgggactccctcg
aggaatggataccgactcacggtgatgtgctacaacgttctgagtgccaactacgcgact
cactcgcagtacccctattgtcccagctgggccattgattgggagtatcgacgtaggggc
atcctggaggagttgcggcaatacgagccgaacataatttgtctgcaggagatcgacact
gaccaatttgagacggtatttgtaccggagctggcaaaaaataactatgagggtgtattt
ttgcccaagtcgcgctcacgtacaatggaacctgcattggcacgtaaagtggacggttgt
gccattttctggctttcggagaagtttaccaaggtggctgaattccaccacgaattcatg
atctcctgctcctccgtcgctgaccatccctctcctctacttatcaaccgggtcatgact
cgcgacaatgtcgccattggtgttgttctggagattaagaactcaggtacgaatggtcgg
aggttctgtgtaaccacgggtcacatccactgggatccggagcattccgacgtgaagttg
attcaggccatcttatggactgccgagttgtggtcccgtttggaacggttcaatggcgac
tgtgaaaaaccgggcttgggtgcctctcgaatgcccgtgatcctttgtggggatttcaac
tctctaccagattcgggtgtggtcgagtacctctccacaggtagcgttcccaccacccac
gtcgaattcctcaatttcggctttaattaccattttgaagactggaagttgctcgagaaa
tgggcttacgaaggcaatattttgcgtcatcgtttcaactttgatcgagcttatcgtggc
aacgccaatgacggaatgagggtcaccaacttgacgtacgactttaagggaatgatcgac
tacatcttcttttctcgaaaccacttccgccttttgggaagtctggatcagatccccgac
tcttggtttgtggaagagcgagttttgggctgtccacacattcacgtgccttcggaccac
ttctcactactggtggagctggatctgttgggacagcctggtcgcggtctggctatctcg
gatcccgctgagtctctcgttcctatttctagtgcgcctctggtagcggcagcatccgca
accgcatctacaaccgcccctaccgatacgacctctatggtcaccaatatcagtagcact
actcccactaccgccactttaagcacggcgagttctggcgctattggatctacgtctact
ggcaccactggcagcaccacctctgctagcatgtcaggtgcagccgcaagtacagcaaca
gcctcctctgccacgaacagtccaaagccaaagggatcctctggtggtccctccgggctc
ctctattccggtttgcggtgtaagatgttgcacggagttggtgttttaactggcgagact
gtcgatgactgcaagtgttgtcagaagcggtgctgtgaggatagtcggtacggaatgagg
gttgaggcctggttggcagcagcaggctctttgctgaaccgatgtgagatggcaaaggag
ggcttgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system