KEGG   Echinococcus granulosus (hydatid tapeworm): EGR_06711
Entry
EGR_06711         CDS       T05553                                 
Name
(RefSeq) General transcription factor IIH subunit 4
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
egl  Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03022  Basal transcription factors
egl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:egl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    EGR_06711
  09124 Replication and repair
   03420 Nucleotide excision repair
    EGR_06711
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egl03021]
    EGR_06711
   03400 DNA repair and recombination proteins [BR:egl03400]
    EGR_06711
Transcription machinery [BR:egl03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     EGR_06711
DNA repair and recombination proteins [BR:egl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     EGR_06711
SSDB
Motif
Pfam: Tfb2 Tfb2_C
Other DBs
NCBI-GeneID: 36342426
NCBI-ProteinID: XP_024349620
Position
Unknown
AA seq 469 aa
MCAKKVAESAACIFDYLKTLDANDLDELYSHPPTCLIVFRELEELAKQIVHRLLFLEQAI
PKSIITGWVPKGSQGLLSQACKDLSDLCVWHSIDSDSARGSWRLNKKFQESMKVSLFGGG
PQLLSDFGSTAAEKHPKDAEFLDNYASERWDSILHFMVGSDSAEVGTCVRDVLLLSGLMK
RGGPDLSMGITQRGFQFLLMDRPTQVLRFMLHYFDYLKGNQMHIIEALHFVFQLSFLSFG
KSYPISMLSQTQQDLLQHMRELGLAYQRKRTAPRFYVTRLALSLAFGSPAALNSLRGSVD
AEPDALFSANRLPTGVSQRGSRGSGTGTGDTSDIGYILVETNFRLYAYTDSLLKTALLSL
FSKIRVRYPNLVVADITRDSVREALLRGISANQPTILPPTLVDQIRLWELERDRLFFQEG
CLYEQFAKNTDFEMSNGYLLWECPERRVMVVSKAGHDDVRAFWKQKRPV
NT seq 1410 nt   +upstreamnt  +downstreamnt
atgtgtgctaagaaggtggccgaatccgctgcttgtattttcgattatctaaaaaccttg
gatgcaaatgacttagatgaattatacagtcatccaccaacttgcctcattgtatttaga
gagctcgaagaactcgcgaaacagatcgttcatcggttgctctttcttgaacaagcaata
ccaaaatcaataatcactggatgggttccaaaaggttcacaggggcttttgagtcaggct
tgtaaagatttgtccgatttgtgtgtatggcacagcattgacagtgacagtgctcgggga
tcctggaggcttaataaaaagtttcaagaatcaatgaaagtgtcactttttggcggagga
cctcaattattaagtgattttggttcaactgctgcggaaaagcatccaaaggatgcggaa
ttcttggataactatgcatctgaaaggtgggattctattttacatttcatggtcggatca
gactcagctgaggtgggtacctgtgtcagagatgtgcttttactgtctggattgatgaaa
agaggaggtcctgacctttcaatgggtattacacaaaggggatttcagttcctcctcatg
gacaggccaacacaagttcttagatttatgctgcattattttgattaccttaagggaaat
cagatgcacataatcgaggcacttcactttgttttccagttgagcttcctctcatttggc
aagagttatcctatcagtatgctgtcacagacacaacaagatctgttgcagcacatgcga
gagctgggtttagcttaccaacgcaaacgcactgcccctcggttctacgtgactcgttta
gcactgagtctcgcttttggctccccggcagccctaaattctttgcgtggctctgttgat
gcagaacctgatgctctcttctcggccaatcgtcttcccactggagtcagtcagcgtggc
tctaggggcagtggcactggtaccggagacacatcggatatcggctatattcttgttgag
acaaactttcgactttacgcctataccgattcacttctcaaaacagctttattgagcctt
tttagtaaaattcgcgtgcgctaccctaacttggtggtagctgacatcacccgagactcc
gttcgagaggctctgctgagaggaatcagtgccaatcaaccaacaattctaccaccgaca
cttgtggatcagatccgtctctgggagcttgaacgagaccggcttttcttccaggagggt
tgcctttatgaacagtttgctaaaaataccgactttgagatgagtaatggatatctattg
tgggaatgtccagaacgtcgggtcatggtcgtctctaaagctggccacgacgacgttcgc
gcattttggaagcagaagcgacccgtgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system