KEGG   Elizabethkingia ursingii: BBD34_10290
Entry
BBD34_10290       CDS       T05036                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ego  Elizabethkingia ursingii
Pathway
ego03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ego00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBD34_10290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ego03021]
    BBD34_10290
   03019 Messenger RNA biogenesis [BR:ego03019]
    BBD34_10290
Transcription machinery [BR:ego03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BBD34_10290
Messenger RNA biogenesis [BR:ego03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BBD34_10290
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab NACHT AAA_25 AAA_22 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: AQX09011
UniProt: A0A1T3FI30
Position
2260617..2262383
AA seq 588 aa
MFDIESLKSKSDTELTKISKDLGIGVKKTSDINEKIYAILDFQASNPQTIKDYLGPQDKG
NDAGNEEAAQPKKRGRKPAAKAEVVKTPEEPAKPETPVKEVRKKAETTKAEVPVEEAVKV
TEETSQPEKKQRRRVTKTQPPVEAKATPEETAPEASEPVEVVAPAKKETQAVPQQKNNNQ
NNNNNNNNQNQNRQHHHNQNRNNGDAKHSEPQKKEYSFDGIVTVEGVLEILPDNYGFLRS
SDFSYISSPDDVYVSTSQIKNYGLKTGDTVKGIVRLPKEGEKYFSLQRPTEVNGRDLAYI
KDRVAFEFLTPLFPQEKFNLAGKNATLSTRIVDLFAPIGKGQRAMIVAQPKTGKTMLLKD
IANSISANHPEAYMMVLLIDERPEEVTDMQRSVNAEVIASTFDEAADKHVKVANLVLSKA
QRLVECGHDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHKPKRFFGAARKIEGG
GSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANKRIYPAVDLISSSTRRDDL
LLDEVTQQRMWIMRKYLADMNPVEAMEFVKKHMQSTVNNEEFLMSMNK
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgtttgacattgaaagtctaaagtcaaaatcggataccgaattgacgaaaatctcaaaa
gatttaggtattggtgtgaagaaaacttccgatattaacgaaaaaatttacgctatattg
gattttcaggcatctaaccctcaaacgattaaggattacctcggaccacaggataaagga
aatgatgccggaaatgaagaagctgcacaacctaagaaaagaggaaggaagcctgctgct
aaagctgaagttgtaaaaactccagaagaaccggctaagcctgaaacgcctgtaaaggaa
gttagaaaaaaggccgagactactaaagctgaagttcctgtagaggaagctgttaaagtt
accgaggaaactagtcagccagaaaaaaagcaaagaagaagagttacaaaaactcaaccg
cctgtagaggcaaaagcaacaccggaagaaactgctccggaagcttcagaacctgttgaa
gttgtggcgcctgccaaaaaagaaacacaagctgttcctcagcaaaaaaataacaaccag
aacaataacaacaacaataataatcagaatcagaacagacaacatcaccataatcagaat
agaaataatggcgatgcaaaacattctgaaccacagaagaaggaatatagcttcgatggt
attgtaactgtggaaggcgttctggaaattttaccagataattatggattccttagatct
tcagactttagttatatctcgtctccggatgatgtatatgtatctacaagtcagattaag
aactatgggttaaaaactggtgatacagtaaaaggtattgttcgtttacctaaagaagga
gagaagtatttctctttgcaacgtcctacagaagttaatggaagagaccttgcttatatt
aaggatagagtagctttcgaatttttaacgccacttttccctcaggagaaatttaacctg
gcaggaaaaaatgcaacactatcaacaagaattgtagacctttttgcaccaattggtaaa
gggcagcgtgctatgatcgtagcacagcctaaaactggtaaaacaatgttgttgaaggat
attgccaatagtatttctgcaaatcacccggaagcttatatgatggtcttattgatcgac
gaaagaccggaagaagtaacggatatgcagagaagtgtaaatgcagaagttattgcatct
acgttcgacgaagctgctgacaagcacgtaaaagttgccaacctggtattatctaaagct
cagagacttgtagaatgtggacacgatgtagtaatccttctggactctattactcgtttg
gccagagcttacaacacagtaactcctgcatccggaaaaatactttctggtggtgtggat
gctaatgcattgcacaaaccaaagagattctttggtgcagcgagaaaaattgaaggtggt
ggttctttaactattattgcaactgcactaattgatacaggttctaaaatggacgaagtg
atctttgaagaattcaaaggaacaggtaacatggaacttcaattagacagaaaaattgct
aacaagcgtatttatcctgctgtagaccttatctcttccagtacacgtagagatgatctg
ttactcgacgaagtaactcagcaaagaatgtggattatgcgtaagtaccttgccgatatg
aatcctgtagaagcaatggagtttgttaaaaaacacatgcagtctaccgtaaataatgaa
gagttcttaatgtccatgaacaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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