KEGG T03547: 104436128

Eucalyptus grandis (rose gum): 104436128

Entry

104436128         CDS       T03547

Name

(RefSeq) dicer-like protein 4 isoform X1

K11592

endoribonuclease Dicer [EC:3.1.26.-]

Organism

egr Eucalyptus grandis (rose gum)

Brite

KEGG Orthology (KO) [BR:egr00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:egr03036]
    104436128
Chromosome and associated proteins [BR:egr03036]
Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    104436128
   microRNA pathway
    RISC loading complex
     104436128

SSDB

Motif

Pfam:

Ribonuclease_3 Ribonucleas_3_3 Dicer_dimer DEAD Helicase_C DND1_DSRM ResIII dsrm PAZ IstB_IS21

Other DBs

NCBI-GeneID:

104436128

NCBI-ProteinID:

XP_010047156

UniProt:

A0A059CL85

Position

3:complement(3317325..3331769)

AA seq 1658 aa
MPGSGAEETVRGPNGFFASRPPRPPLCSVSGAAEDDVGVSSEVGKAEKDPRKIARTYQLE
LCKKALEENVIVYLGTGSGKTHIAILLMYEMGHLIRKPSKNICVFLAPTVALVQQQARVI
GDSIDFKVGSYCGGSKRLKTHAEWEKEIEKYEVLVMTPIILQRCLSHCFIKMDSIALLIF
DECHHAQVKSGHPYAEIMRIFYKADLLKRPRIFGMTASPIVGKGASEQENLPRCINSLEN
LLNAKVYSVEDKEELDSFVASPTVKVYYYGPVVHGTSSSFVTRCWQLEEVKRQCLSTLSR
KKDDLQILRSTKRMLNRMHDNIIICAESLGFWGATQACQILLRGDYSERNALIEEAENSS
DVPLCDKYLTQAASIFASDCPKDDITSLEILKEPLFSSKLLCLVHVLSSFRSRPNAKCIV
FVNRIVIARSLTYLLQNLTMLASWKCDYLVGVHSGQRSMSRKNMKSILDNFQSGKLNLLV
ATKVGEEGLDIQTCCLVIRFDPPETVASFIQSRGRARMPQSEYAFLVDWGNQKEIDLIDN
FKKDEDRMNVEITARTSDESFSALEERIYRVDSSGASISSGSSISLLYQFCAKLPHDEYF
DPKPKFYYFDDVGGTVCHIILPPNAPIYQIVSTPRISMEAAKKDASLQAIEELHKLGALD
DFLLPQRDDDKLEEMLMSSDTDSCEDESSRGELHEMLVPEALRESWSGLERVALHTYYIE
FCPDPADRTYKEFGLFVKACLPAEAGTMEIDLHLARGRSVKTKLVPSAEVTFKKDEIVEA
QKFQEMFLKVLLDRSELQQESVPLGQGQHNDINSSSSTYYLLLPVISQNSNGRIIVDWNT
IRRCLSSSLFRNPSDTMAKTDVFPPSDLILADGPKRESDVKNSLVYAPYKKLFYFITNIN
FKKNGGSQYKDAEPLTHAEHINRTYGIHLKFPKQPLLHAKPLFNVRNLLHNRKQDDSEAH
ELEEYLIDVPPELCQLKILGFSKDLGSSLSLLPSIMHRLQNLLVAIQLKQRLSASFSEGA
KVTPNRILEALTTEKCQERFSLERLEILGDAFLKFAVGRHLFLRHEALDEGGLTRKRSKA
VNNSNLFNLAVKSNLQVYIRDQPFEASQFFALGRPCPNICNNESEGMIHSHHQNGAAPQS
KAYEVRCSKGHHWLQKKTIADVIEALVGAFIVDSGFKAATAFLRWIGLEVDFDARQVSSA
CIGSTRYLTLADCVDIDSLEDYLRYKFHHRGLLLQAFVHPSYNKHGGGCYQRLEFLGDAI
LDYLITSYLYSAYPKLKPGELTDLRSLAVNNKAFANVAVERSFHKFLLCDSSSLSEAIKD
FVDFVKRSASLKGFLEGPKCPKALGDLVESCVGAILLDTGFDLNCVWSLMLSFLDPIMRF
SNFQLNPKRELQELCQSCNLILQRSVIKKGVSYSVETKVLCKDEPLSKDEWAVASVTNLN
KQDALRNSAQKVIEKLKARGYTPKYKPLEEILKSSCKMEAKLIGYDEVPVDVMSFDVNGS
ENINMAPSNMNCSPKVYAINEASRSSSASIIPLGKQPPRLSETASGSDANEISADTGCDN
ESQRKGAIPKGSAKSHLYEICAANCWKPPEFECCKEEGPGHLKLFWYKVVVAIEDSPGMV
LECFSDPRATKKAAAEHAAEGALWYLRHEGYVHTNKVK

NT seq 4977 nt +upstreamnt +downstreamnt
atgcccggcagcggagcggaggagaccgttcgggggccgaacggtttcttcgcttcgcgc
ccgcctcggcctccgttgtgtagcgtttcgggtgctgctgaagatgacgtgggggtgagc
tcggaggtgggaaaggcggagaaggacccgaggaagattgcgaggacatatcaattggag
ctttgcaagaaagctttggaggagaatgtgattgtgtacttggggactggtagtgggaag
acccatatagccattttgctaatgtatgagatgggtcacttgatacggaaacccagcaag
aacatctgcgtatttcttgcgcctactgttgctttggttcaacagcaagccagggttata
ggagattcaattgacttcaaggttggcagctactgcgggggctccaagcgattgaagaca
catgcagagtgggagaaggagatagaaaaatatgaggttcttgttatgacccctataata
ctgcaacgttgcttgtcacactgtttcatcaagatggactctattgctcttctgatattt
gacgaatgccatcatgctcaagtcaaaagtggtcatccttacgctgaaattatgaggata
ttttataaagctgatctcttgaagcggcctcggatatttggcatgacggcatctccaatt
gttggaaaaggtgcttctgagcaagaaaatcttccaagatgcatcaatagtcttgaaaat
ttgctaaatgctaaggtttactcagttgaagataaggaagaattggatagttttgtggca
tcacctactgtgaaagtgtattattacggtcctgttgtgcatggcacatctagctccttt
gtgactcgctgttggcaactcgaggaagttaaacgccagtgcctatcaacactcagcagg
aagaaagatgatcttcaaatccttcgaagcaccaaaagaatgctcaacagaatgcatgac
aatatcataatatgtgcagagagccttggattttggggagcaacacaagcttgtcagatc
ctacttagaggtgattattccgagcgtaatgcattgattgaggaagcagaaaattcaagt
gatgttcctttatgtgataaatatttaactcaggctgccagtatctttgcatctgattgc
cctaaagatgatataacatctttagagattttgaaagagccccttttctcaagcaagctc
ttatgccttgttcatgtactgtcttctttcaggtctcggccaaatgcaaagtgtatagtt
tttgtgaacaggatagttattgcgagatcattgacttacctgctgcaaaatcttacaatg
ttggcatcttggaaatgtgattatcttgtgggggttcactcaggacaaagaagcatgtca
aggaagaacatgaaaagcattctcgataatttccagtcaggaaagttgaatctattggtt
gctacaaaagtgggtgaagaaggccttgacattcagacatgctgcctggtgatacgattt
gatcctcctgaaactgtcgctagttttattcaatccagaggccgtgcacgaatgcctcaa
tcggaatatgcattcttagtggactggggcaatcagaaagagattgatctgatagataat
ttcaaaaaggatgaagatcgaatgaacgtggagatcactgctaggacatcggatgaatct
tttagtgctttggaggaaagaatatatagggtagattcttcgggcgcttccatcagttct
ggatctagtatctcattactctaccaattctgtgcgaaacttccgcatgatgagtacttt
gatcccaagccgaagttctattattttgatgatgtagggggtactgtctgccacattatt
ctacctccaaatgccccaatttaccagatcgtaagcacaccaaggatatcgatggaagct
gctaaaaaagatgcttctctacaagcaattgaagaattgcataaactaggtgctctggat
gattttctcttgccacagcgtgatgatgacaaacttgaggagatgctcatgtcttctgat
actgacagttgcgaagatgagagttcacgaggtgaactacatgagatgttagttccggag
gcactcagggaatcatggtctggcttggagagagttgctctccatacttactatatagaa
ttttgtcctgatcctgcggataggacctataaagagtttggtctctttgtgaaggcatgt
cttccagcagaggctgggacaatggaaatcgatcttcatctggctcgtggtaggtctgta
aagacaaagcttgtgccatccgcagaggttacatttaagaaagatgagattgtggaagca
cagaagtttcaggagatgtttctcaaggtcctccttgaccgatcagaattacagcaagaa
tctgttcccctgggacagggacagcataatgatatcaattcaagctcatcaacctactat
ctgttgcttccagtcatttcgcagaacagcaacggtcgtattattgtagactggaatact
atcagaagatgcttatcatcttcactcttcaggaatccatctgatacaatggcaaagaca
gatgtttttccaccatccgatttgatacttgcggatggtcccaaacgagaaagtgatgtc
aaaaatagtttagtatatgctccatataagaagttgttctacttcattactaacattaat
tttaagaagaatggaggcagccaatataaagatgcagaacctttaacccatgcagaacac
ataaatagaacgtatggtattcatcttaaatttcccaaacagcctctcctgcatgcgaaa
cctctttttaatgtgcgcaacctgctgcataaccggaagcaagatgactcagaggcacat
gaacttgaagaatacttgattgatgtacctcctgagctctgtcagctgaaaatacttggg
ttctctaaagatttggggagctctttatcattgttgccatcaatcatgcaccgtctacaa
aacttgcttgtggccattcaactgaagcagcggttatctgcttctttctcggagggagct
aaagttactcctaatagaattttagaagcgctcacaacagaaaagtgccaagagcgcttt
tctcttgaaaggcttgaaatacttggagatgctttcctcaaatttgctgttggtcgacat
ctttttctccgccatgaggcacttgatgaaggtgggctcaccaggaaacgttcgaaggct
gtaaacaattctaacttgttcaatttggctgtgaagagcaacttacaggtatacatacgt
gatcaaccattcgaagccagccaattttttgctctgggccgtccttgcccaaatatctgc
aacaacgaatcagaaggaatgatccattctcatcatcaaaatggtgcagcccctcagtca
aaagcttatgaagtcaggtgcagtaaaggtcaccactggttgcagaagaaaactattgcc
gatgtgattgaagcccttgtaggagcattcatagttgatagtggtttcaaagctgcaact
gccttccttagatggattggcctagaagttgactttgatgcacggcaagtttccagtgct
tgcattggaagtactcggtacctgactctggctgactgtgtggacattgactcacttgaa
gattatttaagatataagtttcatcatagaggtcttcttcttcaagcattcgtacatcct
tcttacaataaacatggtggtggctgttatcagcgacttgagtttcttggagacgccatc
ttggattacttgatcacgtcatatctctactctgcatatccaaagttgaaacctggagaa
ttgacagatttgagatcgctggctgtcaataataaggcatttgctaatgttgcagtcgaa
cggtccttccataagtttcttctttgtgattccagtagcctctctgaggccataaaagac
tttgtggactttgtaaagagatcagcatcattgaagggttttcttgaggggccaaaatgt
ccgaaggctcttggtgacttggtagagtcttgtgttggtgccattctccttgacacggga
ttcgatctgaactgtgtttggagcttgatgctatcctttctggatccaatcatgcgcttt
tccaacttccagctgaatccaaaacgggaactgcaagaactttgtcaatcttgcaatctg
attctgcagcgttcggtaattaagaaaggtgtatcatattcagtcgaaacaaaagttttg
tgcaaggatgaacctttgtccaaggatgaatgggctgtggcttctgtgaccaacttgaat
aaacaagatgctctcaggaactctgcacaaaaagtaattgaaaagttgaaggctcgaggt
tacacaccgaagtataagcctctcgaggaaatattgaagtcatcctgtaaaatggaagcc
aagctaataggctatgatgaagttcctgtagatgtaatgtcttttgatgttaatggatct
gaaaacatcaatatggcaccctctaacatgaattgtagccccaaagtttatgcaatcaat
gaagcttccagatcttcttccgccagcataattcctcttgggaaacagcctccgcgactt
tctgaaacagcgagtggaagtgatgccaatgagataagtgctgatactggatgtgataat
gagtcacaaagaaaaggtgcgattcccaaaggatctgcaaaatctcatttgtatgaaatt
tgtgctgctaattgttggaaaccgccagagtttgagtgttgcaaagaggaaggaccagga
cacttaaagctgttctggtacaaggtggttgttgcgatagaagattcgccgggcatggtt
ttggaatgctttagtgatcctagggcaacaaagaaagctgcagccgagcatgcagcagaa
ggggctctttggtatttaagacatgaaggatacgtccatacaaataaagtgaagtag

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (59)   

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