KEGG   Eucalyptus grandis (rose gum): 104437679
Entry
104437679         CDS       T03547                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03013  Nucleocytoplasmic transport
egr03015  mRNA surveillance pathway
egr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104437679
  09122 Translation
   03013 Nucleocytoplasmic transport
    104437679
   03015 mRNA surveillance pathway
    104437679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egr03019]
    104437679
   03041 Spliceosome [BR:egr03041]
    104437679
Enzymes [BR:egr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104437679
Messenger RNA biogenesis [BR:egr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104437679
Spliceosome [BR:egr03041]
 Complex C
  Other components
   EJC/TREX
    104437679
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104437679
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 104437679
NCBI-ProteinID: XP_010048977
Position
3:52012792..52019306
AA seq 427 aa
MGETRDNDAYEEELLDYEEEEDKAMDSASAKVNGEATKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIETVAGQVAALV
LCHTRELAYQICHEFERFSKYLPEIKIAVFYGGVNVRIHKELLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CHKFMQDPMEIYVDEAKLTLHGLVQHYIKLSEGEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVDCNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDTLNQVQARFEVDIKELPEQID
TSTYMPS
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgggagagacgagggacaacgatgcgtacgaggaggagctcctcgattacgaggaggag
gaagacaaggccatggactccgcctccgccaaggtcaacggcgaagccaccaagaagggt
tacgtcgggattcacagctccggtttcagagacttccttttgaagccagagttgcttcgt
gctattgtggactccggtttcgagcacccatccgaagtccaacacgaatgcattcctcaa
gctatattgggcatggatgtcatttgccaagcaaaatctgggatggggaaaacagctgtt
tttgttttgtcaactttgcaacaaattgaaacggttgctgggcaagttgctgcacttgtt
ctctgtcacacgagggagttagcctatcagatctgtcacgagtttgagaggttcagtaag
tatttgccagagatcaagattgcagttttttatggtggcgtcaatgtcagaatccacaag
gagctgttgaagaatgaatgcccccatattgttgttggcacacctggcagaattttggct
ctggcaagggacaaggacctttctttaaagaatgttaggcatttcatccttgatgagtgt
gacaagatgctcgaatctctcgacatgaggagagatgtgcaggagatattcaagatgacg
cctcacgataagcaagtcatgatgttttcagcaaccctcagcaaagaaatccgcccggtt
tgccacaagtttatgcaagatcctatggaaatatatgttgacgaggccaagttgaccctt
cacggtcttgtacagcactacatcaaattaagtgaaggggagaaaaatcgcaagctaaat
gaccttcttgatgcattggacttcaatcaagtcgtaatcttcgtcaaaagtgtcagccga
gctgctgagttaaacaagttactcgtggattgcaactttccttctatatgcatccattct
ggcatgtcacaggaggaaaggttgacacggtacaaaggtttcaaagaagggcataaaagg
attcttgttgcgacagatttggttggtcgggggattgacattgaacgtgttaatattgtg
attaactatgacatgccagattctgccgacacttatctgcacagggttggtcgagctgga
aggtttggcactaaaggcttggcaatcacatttgtttcttctgcttcagattctgacaca
ctcaaccaggttcaagctaggttcgaggtggatataaaggagcttcctgaacagatagat
acctctacatacatgccatcctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (65)   
   KEGG ORTHOLOGY (1)   
   RefGene (61)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (79)   

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