KEGG   Eucalyptus grandis (rose gum): 104439114
Entry
104439114         CDS       T03547                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:3.6.4.13]
Organism
egr  Eucalyptus grandis (rose gum)
Brite
KEGG Orthology (KO) [BR:egr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egr03019]
    104439114
   03041 Spliceosome [BR:egr03041]
    104439114
   03036 Chromosome and associated proteins [BR:egr03036]
    104439114
Enzymes [BR:egr01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     104439114
Messenger RNA biogenesis [BR:egr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104439114
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     104439114
Spliceosome [BR:egr03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    104439114
Chromosome and associated proteins [BR:egr03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    104439114
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 104439114
NCBI-ProteinID: XP_039166125
Position
3:16551704..16555819
AA seq 463 aa
MACAQTGSGKTAAFCLPIVFGVLREGSKRERHPSSRRTACPSGLVLSPTRELACQIYEEA
KKFAYQTVVKVAVVYGGAPFGQQVRTLEKGVDILVATPGRLVDMIERDKVSLRKIRYFTM
DEADRMLDMGFEPQIRKIVERMDMPPSGARQTMLFSATFPDDIQRLASDFLSDYIFLAVG
RVGSSTDLIAQKVEFVDDKDKRSFLVDLLHSQGKNGCVGSKQGLTLVFVETKRGADALEN
WLLRSGFHAIAIHGDKVQMERERALRSFRSGTIPIMVATDVASRGLDIPHVAHVINYDLP
KSIDDYVHRIGRTGRAGKSGLATAFFNGKNLSLATALVQLMQEANQQVPSWLGECAEQSG
SRSHGLARNRRASRFGGNDFRRGPKSSNRSYSSSSSYRDAHTYGSGENYYADPPSTDVYG
YAAADSYLSASHGYYDAANNNSRANESDGYGTSHGSVMASGWE
NT seq 1392 nt   +upstreamnt  +downstreamnt
atggcgtgcgcacagaccgggtccggcaagacggccgccttctgcttgccgatcgtcttc
ggggtcttgcgcgagggctcgaagagagaaaggcacccgtcgtcgagaagaaccgcgtgt
ccttcgggcctcgttctgtctccgacgagggagttggcttgtcagatatatgaggaggcg
aaaaagtttgcatatcaaactgttgtgaaagtcgctgttgtatatggtggtgcgccattt
ggtcagcaggttcgcaccctggaaaaaggtgtcgatattttagttgccacacctggtcgg
ttggtggatatgattgaaagagataaagtctctctaaggaagattagatattttactatg
gatgaagctgatcgtatgctagatatgggctttgagccccagattcgcaagattgtcgaa
cgaatggacatgccaccatctggagcaaggcagacaatgctattcagtgctacttttcca
gatgatatacagaggctggcgtccgattttctctctgattatatatttcttgccgttgga
agggtaggctccagcacggatctgattgctcaaaaggttgaatttgttgatgataaggat
aagagaagctttcttgtggatcttcttcattcccaaggaaaaaatggatgtgttggcagc
aagcaaggtttgactttagtgtttgttgagacaaagaggggagcagatgcccttgagaac
tggctgttgagaagtggctttcatgctattgctatacatggagataaagttcaaatggaa
agagagcgagctctgagatcattcagaagcggaaccattccaattatggtagcgacagat
gttgcctcacgaggtcttgatatcccacatgttgctcatgttataaactatgacttgccc
aaaagtatagatgactatgtgcacaggattggccggacaggccgagctggtaaatctggg
ttggctactgcattcttcaatggaaagaatttgtcactggcaacagctctcgtgcaactt
atgcaagaggccaatcagcaagtcccttcttggctcggtgagtgtgccgaacagtcaggt
agtcgtagccatggcctggctcgaaatcgtagggcaagcaggtttggcggcaatgacttc
cgaagaggtccaaaatctagcaataggagttactcttcttctagcagttacagagatgcg
catacttacggttctggtgaaaattattatgccgaccctcccagcaccgatgtttacggc
tatgctgctgctgactcgtacctttcagcaagccacggttattatgatgctgctaataac
aattcccgcgccaatgagtcggacgggtatggcacgagccatggatcagtcatggccagc
ggatgggagtag

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