KEGG   Eucalyptus grandis (rose gum): 104449933
Entry
104449933         CDS       T03547                                 
Name
(RefSeq) polyadenylate-binding protein 6
  KO
K13126  polyadenylate-binding protein
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03015  mRNA surveillance pathway
egr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104449933
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104449933
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egr03019]
    104449933
   03041 Spliceosome [BR:egr03041]
    104449933
Messenger RNA biogenesis [BR:egr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104449933
   mRNA cycle factors
    Stress granule specific factors
     104449933
Spliceosome [BR:egr03041]
 Complex C
  Other components
   Complex C specific factors
    104449933
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_3
Other DBs
NCBI-GeneID: 104449933
NCBI-ProteinID: XP_018731912
Position
6:42339761..42344402
AA seq 589 aa
MAAQDDRAQAPGKQRPQSPPKCDRPPQLASLYVGDLHPEVGEADLVAAFSEMGDVASVRV
CRDAASGRSLCYGYVNFFSHFLASKALACLNYSKLKGKPMRIMWCQRDPSRRKAGNANLF
VKNLDPSISSARLQSIFCQYGNILSCKVAEDNGSSKGFGFVQFESEESAMNALRALHDTM
LEGKNIYVSKFVKKSERTSFGEEPEFTNLYVKNLEEDITMDHLQDKFSEYGKVSNVVIMK
NIDGKSRGFGFVNFESPQAAKKAVEALNGTIMGSKILFVGRAQKKAEREQLLKDAHQVVC
SSRVQKSGCNLYVKNLDLSIDDSKLQGYFSSFGTITSAKVMRDDNGLSKGFGFVCFSNCE
EAKRALNTLNGIIFRGKPLYVAIAQQKDDRSRNLQEYRSQIQPQSRHHSYLNPLPGQRYA
PPYNTPLFHLPYTLLSQSIHHQYVGANAGLPYATESYREYHSTSVPGRHAQTQEGNSNNW
VYGHHLTTYSTSGLHGQDQKFCKPKVSGLGIRKRGNRKFLPAENTTNRTRSLPAPSSQGT
CTRTLGNLLYPLVENIQVNKVDQVLREANTRTIASGGMALPKSARCLNY
NT seq 1770 nt   +upstreamnt  +downstreamnt
atggcggctcaagacgatcgagctcaagcgccgggaaagcagcggccgcaatcgccgccg
aagtgcgatcgtcctccgcagctggcctcgctgtacgtcggcgacctccacccggaggtc
ggcgaggccgacctcgtcgcggcgttctcggagatgggcgacgtcgcctccgtgcgcgtc
tgccgggacgcggcctccggcaggtcgctctgttatggctacgtcaacttcttctctcac
ttcctcgcatctaaggctttggcttgtctaaattactcaaagctgaaaggaaagcccatg
agaataatgtggtgtcagagagacccttctcgaaggaaggctggaaatgcgaatctcttt
gtcaagaaccttgacccttctattagcagtgcacgactgcaaagcattttctgccagtat
ggtaacatactctcttgcaaggttgctgaagacaatggatcgagtaagggatttggtttt
gttcagtttgaatctgaggaatcagccatgaatgctcttagagccctccatgataccatg
cttgaggggaagaacatatatgtttccaaatttgtcaaaaaaagtgagagaacgtcattt
ggtgaagaacctgaatttacaaatttatacgtgaaaaatctggaggaagatattaccatg
gatcatctccaagacaagttctcagaatatgggaaggtttccaatgttgtaataatgaag
aatattgatggaaaatcaaggggatttggctttgtcaactttgaatcaccacaagcagca
aagaaagctgtggaggccttgaatggcacaataatggggtcgaaaattttgtttgttgga
agggctcaaaagaaagctgaaagggagcaacttttaaaagatgctcaccaggtggtgtgc
agcagtcgggttcagaagagtggttgcaatttgtatgtaaagaaccttgatttgtccatt
gatgacagcaaactccaggggtactttagtagctttgggacaataacttctgcaaaagtg
atgcgtgatgacaatggattgagcaaaggatttggttttgtttgtttctccaactgtgaa
gaagcgaaaagagcactgaatacgctgaatgggatcatcttcagaggaaaacctctctat
gtagcaattgctcagcagaaagatgatcgttccagaaatttacaagagtatcgttcccag
attcaacctcagtctcggcaccattcttacttgaatcctcttccaggccaacgctatgca
cccccttacaacacgcccctttttcatcttccatacactttactgtcccaatcaattcac
catcagtatgttggagccaatgctggccttccttatgcaacagaaagttacagagaatat
cattccacatctgttcctgggaggcatgcacaaacacaggagggtaactccaataattgg
gtctatggacatcatttgacgacatattccacctctggcttgcacgggcaagatcagaaa
ttctgcaagcccaaggtttctggacttggcatcaggaagaggggcaacaggaaatttctt
cccgcagaaaacaccaccaacaggactagaagtctacctgctccatcatcccaagggacg
tgcactagaactcttgggaaccttctttatccgcttgtcgagaatattcaggttaacaag
gtggatcaagtgctgagggaggcaaatactaggaccattgctagtggtggcatggccttg
cccaaatcggctcgctgcttaaactactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (55)   

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