KEGG   Eucalyptus grandis (rose gum): 104450011
Entry
104450011         CDS       T03547                                 
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12b
  KO
K03126  transcription initiation factor TFIID subunit 12
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    104450011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egr03021]
    104450011
   03036 Chromosome and associated proteins [BR:egr03036]
    104450011
Transcription machinery [BR:egr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     104450011
   Coactivators
    SAGA/TFTC/STAGA complex
     104450011
Chromosome and associated proteins [BR:egr03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     104450011
    STAGA complex
     104450011
    TFTC complex
     104450011
    SAGA complex
     104450011
    SLIK complex
     104450011
SSDB
Motif
Pfam: TFIID_20kDa CBFD_NFYB_HMF
Other DBs
NCBI-GeneID: 104450011
NCBI-ProteinID: XP_010062697
Position
6:43027803..43033023
AA seq 619 aa
MADNPTSSPKPQSSNPMDQAASAASIPGIXSPNPQIPSQSPLSHSSPSIDPAQINSQISS
PPLPHYPQQQQQQQQQQQQQAQSQPQPQPQSLVHQQTQQSLVHQQQQQQQQQAQNVSAMN
NFQIQAGLPRTPSMSRLNQIQMGFMRQQQQQQQQQQQQGGVYGQVNFGGSQQNQPQNQQN
QMVTGNLPRSGLMGQSGHMPMLSGTAAAAAAHMNLQSQMLNSPRQKAGLISGSQFHSGNL
SGQSLQGLQAMGSMGSYNLSSPLRVNGAALSYGPTRMTTGQMRQQLSQSPQVQNLQRTSS
LFMNSPISGLTQGGQSAMMPNNLSQQQWLKQMPISGGPGSPSFRLQQRQQQALLQQQLAS
SPQFSQNPMAPNLQQLSQLVQQSSMGHPQPHQQQQQQQQQQQQLQQQQMHPQQQQQQQPS
PRMLGPAGQKSLSLTGSQPDATASGTTQGGSSSQGTEATNQLLGKRKIQDLVSQVDPQGV
LDPNVEDLLLEFADDFIDQVTTFACSLAKHRKSSTLESKDVLLHLEKNWGLTIPGFSSEG
QKHLKKPLASEFHKKRLDMVRALRDSTFTERSSDISKEITRQGSDNIIGPNHLIRPSPSS
DHLVTQATGSQMLQQLTRF
NT seq 1860 nt   +upstreamnt  +downstreamnt
atggcggacaacccgacctcgtcgccgaagccccagtcttcgaacccgatggatcaggcg
gcctcggcggcgtcaattcccggaatcncatcgccgaacccccaaatcccgtcccaatct
ccgctctctcactcctcgccttcaatcgaccccgcccagatcaattcccagatctcgtcc
cctcctctgcctcattacccccagcagcagcagcagcagcagcagcagcagcagcaacag
gcgcagtcgcagccacaaccgcagcctcaatcgctcgtccatcaacagacgcagcaatcg
ttggtgcaccagcagcagcagcagcagcagcagcaggctcagaatgtttccgccatgaac
aatttccaaattcaggcgggtcttccgagaacgccttcgatgtctaggttaaatcaaata
cagatgggttttatgaggcagcagcagcagcagcagcagcagcagcagcagcaaggtgga
gtgtatgggcaggtcaatttcggcgggtcccagcagaaccagccgcagaaccagcagaat
cagatggtgactgggaatctcccgcgatcgggtttgatggggcagagcggccatatgccg
atgctgtctggtacggccgccgcagctgctgctcacatgaatttgcagtctcagatgttg
aattcgccaaggcaaaaggcaggattaatatcagggagccaattccactctggtaattta
tctggacaatcgttgcaagggcttcaagcgatgggatcaatgggctcctataacttgagc
tcacccctaagggttaatggtgctgctctaagttatgggccaacgcggatgaccacaggg
cagatgaggcagcaattgtcacagtcccctcaagttcaaaacctgcaaaggacatcatcc
ctgttcatgaattccccgatatctggattgactcaaggtggacaatcagctatgatgccg
aacaatttgtcacaacagcagtggttgaagcaaatgccaatatctggtggtcctggttca
ccttcatttcgccttcaacagcggcagcaacaggctcttttgcagcagcaacttgcttca
tcccctcagttttcacaaaacccaatggccccgaatctgcaacagttatcccagctggtg
cagcagtcatcaatgggacatccacagccacatcagcagcagcagcagcagcagcagcag
cagcaacaactgcaacagcaacaaatgcatccgcagcagcagcagcagcagcagccttct
cctaggatgctgggacccgcaggccagaaatctcttagtttgactggatcacagccagat
gctacggcttccggtacaacacagggagggagttcaagtcaaggaactgaggcaactaat
caacttcttgggaaaaggaagatacaggacttggtttcacaggtggatccacagggagta
ttggatcctaatgttgaggatcttcttttagaatttgctgatgactttattgatcaagta
actacttttgcctgcagtttggctaaacatcgcaaatcatcgacgttggagtccaaagat
gtattactgcacctagaaaaaaattggggtttgacaattcctggattttcaagtgaaggg
cagaagcacctaaagaaacctttagctagtgagtttcacaaaaagcgtcttgatatggtt
cgtgcattgagggattctacattcacggaaagaagttcagatatatctaaagaaataacg
agacaggggtctgacaacatcattgggcccaaccacttaataaggccttcaccaagttct
gatcatttggtcacacaagcaactggttctcagatgctgcagcaactaacgcgtttttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (37)   

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