KEGG   Eucalyptus grandis (rose gum): 104453007
Entry
104453007         CDS       T03547                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03022  Basal transcription factors
egr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    104453007
  09124 Replication and repair
   03420 Nucleotide excision repair
    104453007
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egr03021]
    104453007
   03400 DNA repair and recombination proteins [BR:egr03400]
    104453007
Transcription machinery [BR:egr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     104453007
DNA repair and recombination proteins [BR:egr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     104453007
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 104453007
NCBI-ProteinID: XP_010065813
UniProt: A0A059BBK6
Position
7:complement(21821865..21828679)
AA seq 296 aa
MASAPSKLYADDVSLLVVLLDANPFFWSASSLPFSKFISHVISFLNSVLLLNQLNQIVVI
ATGHNCCDYVYDSSSPASRSAGTGKLSALSVDLLEKLEEFVGRDEKLLKKEPEGSIASSL
LSGSLSMALCYIQRVFRSGPRHPHPRILCLHGSQDGPEQYVAIMNAIFSAQRSMVPIDSC
FIGAQNSAFLQQASYITGGVYLKPQLLEGTFQYLSTVFGTDLHSRGFLQLPKSVGVDFRA
SCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQPHSEAASEPNKKRKAGDT
NT seq 891 nt   +upstreamnt  +downstreamnt
atggcgtctgctccttccaagctatacgcagatgacgtcagcctcctcgtggtgttgctg
gacgcgaaccctttcttctggagcgcttcctccctccccttctccaagttcatctctcac
gtgatttcgttcctgaattcggtcctgctgctcaaccagctgaaccagatcgtggtgata
gctaccgggcacaactgctgcgactacgtgtatgattcttcctcgccggcgagccggtcg
gccgggacggggaagttgtcggccctgtccgtggatcttctggagaagttggaggaattc
gtgggtcgggatgagaagttgttgaagaaagagccggaagggtcgatagcgtcttcgctg
ctgtccgggtcgctgtccatggcgctttgctacattcagagggtttttcgttcaggaccg
cgacatccacatcctcgaattttatgcttgcatggatctcaggatgggcctgaacaatat
gttgccatcatgaatgcaatattctctgctcagcgttcgatggtccctattgattcctgt
ttcatcggagctcaaaattctgcctttctccagcaggcttcctatattactggtggtgta
tatctgaagccacaactattggagggaacatttcagtatttatcgacagtttttggcact
gatttgcattctcgtggattcttgcaattgcctaagtccgttggtgtagattttcgcgca
tcgtgcttttgtcacaaaaaaactattgacatgggctacatctgttctgtatgcttgtct
atattctgcaagcaccacaagaaatgttcaacctgtggatctgtttttggtcagccccac
tcagaggctgcctcagaacctaacaagaaaagaaaggcgggagatacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (61)   

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