KEGG   Elaeis guineensis (African oil palm): 105048875
Entry
105048875         CDS       T03921                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105048875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:egu03041]
    105048875
Enzymes [BR:egu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     105048875
Spliceosome [BR:egu03041]
 Complex C
  Other components
   Step II factors
    105048875
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N S1 DEAD AAA_22 AAA_19 AAA_30 nSTAND3 AAA_16 Flavi_DEAD TsaE Sigma54_activ_2 ABC_tran T2SSE PhoH
Other DBs
NCBI-GeneID: 105048875
NCBI-ProteinID: XP_010926650
UniProt: A0A6I9RHK5
Position
7:21760361..21766836
AA seq 1190 aa
MAPAAEDGLKKLEYLSLVSKICTELESHVGCGDKVLAEFITELGRRSETVEEFDAKLKEN
GAEMPDYFVRTLLTIIHAIVPPKPKSAKPSSDQNQDKKKSSAFPALSRPDDLERAKELRR
EIEHDAEMKAASEARSRDEHHDRDGGRDRERHRHRDRDRDGDRDRDRDRRRDRDREYRRD
RDRDRDWDRHNRDRSHRRDRDRDRDDNSRAYDEEEEDGRDGRNPNPSNRRYADEPELYRV
YKGRVSRVMDTGCFIQLNDFKGKEGLVHVSQIANRRVANAKDAVKRDQEVFVKVISVSGQ
KLSLSMRDVDQKTGKDLLPMRKNSEDEALRANPSSGNNGPVTRTGLSGITIVEEEDNGPS
RRPLKRMSSPEKWEAKQLIASGVLDVREYPMFDDDGDGLLYQEEGAEEELEIELNEDEPA
FLQGQSRFSIDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNR
PWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIY
KLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAK
RVAEEFGCRLGEEVGYAIRFEDCTSPETVIKYMTDGMLLREILVDENLSQYSVIMLDEAH
ERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILY
TKQPETDYLDAALITVLQIHLTEPEGDILVFLTGQEEIDHACQCLYERMKGLGKNVPELI
ILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPK
QGIDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGLT
TLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPP
LSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAV
YEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVSAGKNFTKIRKAIT
AGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVI
DPKWLVELAPRFYKSADPTKLSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 3573 nt   +upstreamnt  +downstreamnt
atggcgccggctgctgaagacggtctgaagaaactcgagtacctctctctcgtctccaaa
atctgcacggagctcgagtcccacgtcgggtgcggcgacaaggtcctcgcagagttcatc
accgagctcggccgcaggtccgagacggtggaggagttcgacgccaagctcaaggagaac
ggcgccgagatgccagactacttcgtccgcaccctcctcaccatcatccacgccatcgta
cccccaaagcccaagtccgccaagccctcctccgaccagaatcaagacaagaagaaatcc
tccgccttccctgccctctcccgtccagacgacctcgaacgcgccaaggagctccgccgc
gagatcgagcacgacgccgagatgaaggccgcgtctgaagcccgcagccgcgacgagcac
cacgatcgtgatggcggccgagatcgggagcggcaccgacatcgggatcgggaccgagat
ggagatcgggaccgagatcgagacaggcgacgcgatcgagatcgagagtataggcgagat
agagatagagacagagactgggacagacataacagagataggagtcacagaagggatagg
gatagagatagggatgataattctagggcatatgacgaggaggaagaagatggcagggat
gggagaaaccctaacccgagtaatcggaggtatgcggacgagccggagctctatagggtg
tataaaggtagggtttcgcgagtgatggatacggggtgcttcatccagctgaatgatttc
aaggggaaggagggtctggtccatgtttcccagattgcaaatagaagggtcgccaatgca
aaggatgcagtgaagcgcgatcaagaagtgttcgtgaaggtgatctcagtgtcagggcag
aaacttagcctttccatgagggatgtggaccagaagaccggaaaggatctgcttccaatg
aggaagaactcggaggatgaggcactgagggcgaacccttcaagtgggaacaatgggcca
gtgacaaggactggcctttcgggcatcacaatcgtggaggaggaagacaatggaccatct
cggcggccgctgaagaggatgagctcaccagagaaatgggaggcgaagcagttgattgct
tctggggttttggatgtgagggagtatcctatgttcgatgacgatggcgatgggctgctg
tatcaggaagagggggctgaggaagagcttgaaattgagcttaatgaggatgagcctgca
ttcttgcaagggcagagccggttctcaattgacatgtcccctgtcaagattttcaagaat
ccagaaggttctttgagtagggcggcagctctccagtcagctctcattaaggagaggagg
gaggtccgagagcagcagcagaggacaatgcttgattccatcccgaaggatcttaaccgt
ccatgggaggaccctatgccagagacaggtgagaggcaccttgctcaggagctgaggggt
gttggtttgtctgcctatgacatgcctgaatggaagaaagatgcatatggaaaggcttta
acttttgggcagaggtcaaagctttcaatacaggagcaaaggcagagtcttccgatctat
aaactaaagaaagaactgattcaagctgtgcatgataaccaggtgctggtcgtcattggt
gagaccggttcagggaagacaacacaagtgactcaatacctggcagaggcaggttacaca
acaagaggtaaaattgggtgcacgcagcctcgtagggtggcagcaatgtcggttgcgaag
agggtggcagaagaattcggttgtcgtttgggagaagaggttggttatgctattaggttt
gaggactgcactagtccagagacagtgatcaagtatatgacagatggtatgcttcttagg
gagattttggtcgatgaaaacctttcacagtactctgttatcatgcttgatgaagctcat
gagagaacaatccacaccgatgttctttttggtttactaaaacagctagtgaaacgcagg
cctgaccttcggttgatagtcacttctgccacacttgatgcagaaaagttctctggttat
ttttttaactgcaatatcttcaccattccgggaagaacatttccagtggagatactctac
acaaagcaaccagagactgattacttagatgcagcactaattactgttttgcagatccac
ctgacggaacccgagggtgatattcttgtctttttgactggccaagaagaaattgatcat
gcttgtcagtgtctttatgagagaatgaaaggtttaggaaagaatgttccagagttgatt
atcttgccagtatacagtgctcttccaagcgaaatgcaatccaggatttttgaacctgca
cctcctggaaagaggaaagtggttgtggctaccaatattgccgaggcttctttgacaatt
gatgggatatattatgttgttgatcctgggtttgcaaagcaaaatgtgtataacccgaaa
caagggattgattcgctcgtcatcactcccatctcgcaagcatcagccaagcagcgagct
gggcgtgctgggcgtactggcccagggaagtgttaccgcctttacacagagagtgcctac
cgtaatgaaatgtcacccaccacaattcctgaaatccaaagaatcaacctcgggttaaca
acgctaactatgaaggccatggggattaatgacctcttgtcatttgattttatggaccca
ccatcacctcaagcactcatatctgccatggagcaactatacagtcttggagcattggat
gaggaggggcttctaaccaaattgggtagaaaaatggctgaatttccactggaaccacca
ttatcaaagatgcttctggccagcgttgacctagggtgcagtgatgagattttgaccatt
atagcaatgattcagactgggaatatcttctacaggccaagggagaagcaagctcaagcg
gatcagaaaagagccaagttctttcagccagaaggtgaccacttaacattgcttgctgta
tatgaagcttggaaggctaaaaatttttctgggccatggtgctttgaaaactttgtgcag
tcgcgttcccttcggagggcacaagatgtcagaaagcagcttcttactatcatggacagg
tataaactggatgtcgtcagtgctggtaaaaactttacaaagatacggaaggcaattact
gcaggattcttcttccatgctgctaggaaggacccccaggagggatacaggaccctagtt
gagaaccagccggtgtacatccatccaagcagtgctttatttcagaggcaaccagattgg
gtcatatatcatgagttggttatgacaacaaaagaatacatgagggaggtaacagtcatc
gatcccaaatggttagtagaattggcaccaagattttataagtctgcagatcctacaaag
ttgagcaaaaggaagaggcaagagcgtattgaaccactatatgacagatatcatgagccg
aactcatggcgtttgagtaaacgccgtgcttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (17)   
   Pfam (17)   
All databases (31)   

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