KEGG   Elaeis guineensis (African oil palm): 105050147
Entry
105050147         CDS       T03921                                 
Name
(RefSeq) polyadenylate-binding protein 2 isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03015  mRNA surveillance pathway
egu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105050147
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105050147
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egu03019]
    105050147
   03041 Spliceosome [BR:egu03041]
    105050147
Messenger RNA biogenesis [BR:egu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     105050147
   mRNA cycle factors
    Stress granule specific factors
     105050147
Spliceosome [BR:egu03041]
 Complex C
  Other components
   Complex C specific factors
    105050147
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded Nup35_RRM RRM_7
Other DBs
NCBI-GeneID: 105050147
NCBI-ProteinID: XP_010928349
UniProt: A0A6I9RLE8
Position
8:25974398..25987423
AA seq 658 aa
MAQVQAQPQAPVSGPAGTGVASGGGGGNQFPSTSLYVGDLELNVTDAQLFDVFNQVGQVV
SVRVCRDINTRRSLGYAYVNYSNPVDAARALEMLNFTPLNGKPIRIMYSNRDPTMRKSGA
GNIFIKNLDKSIDNKALYDTFSAFGNILSCKIATDPSGQSKGYGFVQFDQEEAAHNAIEK
LNGMLLNDKKVFVGPFLRRQDRENTANSTKFNNVFVKNLSESATEDNLLEIFGEYGNITS
AVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVGKAQKKSEREMELKGR
FEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGTITSCKVMRDPNGVSRGSGFV
AFQSPDDASKALAEMNGRMIGSKPLYVALAQRKEDRRARLQAQFSQIMRPVAMPPSVAPR
VPMYPPGAPGMGQQLFYGQPPPALIPPQPGFGFQQPLVPGMRPGVAAMPNFYMPLVQQGQ
QAQRPGGRRAGPVQQTQQHPMPLIQQQMLPRGGRAYRYPPGRNMPDVPMPGVAGGMLSAP
YDMGVMPMRDAGMSQPIPIGALASALANASPEQQRTMLGESLYPLVDQLEHEHAAKVTGM
LLEMDQPEVLHLLESPEALKAKVAEAMEVLRNVAQQQQQASTPADQLAALSLNDGIIS
NT seq 1977 nt   +upstreamnt  +downstreamnt
atggcgcaggtccaggctcagccgcaggcgccggtgtccggaccggcgggaacgggggtg
gcaagcggcggcggcggggggaaccagttcccgtccacctctctttacgtaggggatctg
gagctgaacgtgacggacgcgcagctgttcgatgtgttcaaccaggtcgggcaggtggtg
tcggttcgtgtttgccgggatatcaacacccgccgctcccttggctatgcctacgtgaac
tacagcaatccggttgacgcggcgagggcattagagatgctgaactttactccactaaat
ggaaagcctattcggataatgtattcaaaccgtgaccctaccatgcgtaaaagtggggca
ggcaatatatttattaagaatctggacaagtcaatagacaacaaagcactatatgataca
ttttctgcattcggaaacattctttcttgcaagattgccacagatccatctggtcagtcg
aaaggctatggatttgttcagttcgatcaagaggaagcagcgcataatgccatagagaag
ctaaatggcatgcttttgaatgacaagaaagtctttgttggaccttttcttcgtagacaa
gatagggagaacactgcaaacagcacaaaatttaataatgtatttgtgaaaaatctctca
gaatctgcaacagaggataatttactagaaatttttggagaatatggaaatattacaagt
gctgttgtaatgagggagggtgatgggaagtcaaagtgctttggatttgttaattttgag
gatccagagcatgctgccaaagctgttaaggaacttaatgggaagaaatttgatggtaaa
gagtggtatgttggaaaagcacagaaaaaatctgaaagggagatggaactaaaaggaaga
tttgaacagaggatgcaggaggcagctgacaaaaatcaaggggctaacttatacttgaag
aacttagatgatagcattggggatgacaaactgagagaattgttttctgagtttggcaca
attacttcttgcaaggttatgcgtgatcccaatggtgtaagtagaggatctggatttgtt
gctttccagtctcctgatgatgcatctaaagctctggcggagatgaatggcagaatgatt
ggcagcaaacctctctatgttgcacttgcgcagcgtaaagaagacagaagagcaaggctg
caggcacagttttctcaaataatgcgtccagtggcgatgccaccttcggttgcacctcgt
gtgccaatgtatcctcctggtgctcctggtatgggacaacagctattttatggtcaacca
cctcctgctcttatacctcctcagcctggatttggcttccaacagccacttgttcctggg
atgaggcctggagtggctgctatgccaaatttttatatgcccttggtccaacagggtcag
caggcccaacgcccaggtggtagacgtgctggtcctgtgcaacaaacacagcagcaccct
atgccactgattcagcaacagatgcttcctcgtgggggacgtgcctaccgctatcctcct
gggcgcaacatgccggatgttccgatgcctggtgttgctggaggaatgctctctgcccca
tatgacatgggggtcatgcccatgagagatgctggcatgtcacaacctattccaattgga
gcattggcttcagctcttgcaaatgctagtcctgagcagcagcggacgatgcttggtgag
agtctatatccacttgtggatcagctggagcatgagcacgcagccaaagtgacgggcatg
cttctggagatggaccagcctgaagtgttgcatctgctggagtccccagaggccttgaaa
gccaaagttgccgaggctatggaagttctgagaaatgttgctcagcagcagcagcaggcc
agcaccccagctgatcagttggcggctctgtctttgaatgatggcattattagttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system