KEGG   Elaeis guineensis (African oil palm): 105059003
Entry
105059003         CDS       T03921                                 
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2 isoform X1
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03022  Basal transcription factors
egu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    105059003
  09124 Replication and repair
   03420 Nucleotide excision repair
    105059003
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egu03021]
    105059003
   03400 DNA repair and recombination proteins [BR:egu03400]
    105059003
Transcription machinery [BR:egu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     105059003
DNA repair and recombination proteins [BR:egu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     105059003
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3 Laminin_G_2
Other DBs
NCBI-GeneID: 105059003
NCBI-ProteinID: XP_010940415
UniProt: A0A6I9SBI4
Position
16:complement(3248243..3260791)
AA seq 451 aa
MPEVRIVAKNFMDMVAALPAMKLDKLYGSTFICEAVLRSLPPLAKKYVLQMLFVDSPVTA
KSMEEWLLADGYSKHKVSIDRLLQLRVFLEVNDRKKETSYKMNTKFQSNMQKYLVFGGTL
PREPMPLSVTVRLPTLEDLEAYALEQWECFLLQLINSAQAERLTSFSSSLMRVFQRGLLS
ARENEAPKLTENGFQFLLMDTNAQLWYIIREYISSSEDRGVDPTDLICFLLELSFHTLGE
AYNLNTLTDVQKHAIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSLSDSSSRKEGFVV
VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFENGITAEQIISFL
QQNVHPRVATKTPAVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKDIFEAVCDFAREI
GGLLWEDSKKMRLVVRGEYHQHMRDFLRHQK
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgccggaggtgcggattgtggcgaagaatttcatggacatggtggcagcactgccggcc
atgaaactcgacaagctctatggcagcaccttcatctgtgaagccgtcctcaggtctttg
cctcctctggctaagaagtatgttttgcaaatgctattcgttgattcccctgtaacagcc
aagtcaatggaagaatggctccttgccgatggatattccaagcacaaagtgtcaattgat
cggttacttcagctgagagtcttccttgaagtcaatgatagaaaaaaggagaccagttac
aagatgaacacgaagttccagagtaatatgcaaaaatacttggtatttggtggaacttta
ccgagagagccaatgcccttaagtgtcactgtgagattgccaacgttggaggatctagag
gcctacgctctagaacaatgggagtgcttcttgttgcaacttataaactcagctcaagcg
gaaagattaacaagcttcagttcatcattgatgagagttttccagcgaggacttttgagc
gcaagggaaaatgaagctccaaagttaacagagaatggcttccagttccttctgatggat
acaaatgcacaactttggtacataataagggaatatatctcttcctctgaggatcgtgga
gtggatccaacggatttaatatgctttctcctagagcttagttttcatacccttggagag
gcatataatttaaataccctaactgatgttcaaaaacatgctatcaaagaccttgcagac
ctgggattagtcaaacttcaacagggaagaaaggaaagttggttcatacctactaagttg
gctactaatctttcagtgagcctatcagattcatcatcacgcaaagagggttttgtagtt
gtggagacaaacttcaggatgtatgcctactcttcatcgaaattacactgtgagattcta
cgcctcttttcaaggattgaatatcaacttcctaacctgattgttggagctataacaaaa
gaaagtctctataatgcttttgagaatggcattactgcagagcagattatttctttcctt
cagcagaatgttcatcctcgggtcgcaacaaagacaccagcagtcccagagaacgtcaca
gatcagattagattgtgggaaactgatcgaaatagggttgagatgattccttcacatctt
tatgaagattttccatcaaaggacatctttgaagcagtatgcgactttgcaagggagatt
gggggattgctgtgggaagattcaaagaagatgaggttagttgtccgaggggaataccac
caacacatgcgagattttcttcgtcatcaaaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (9)   
   UniProt (1)   
   RefSeq(pep) (8)   
DNA sequence (13)   
   RefSeq(nuc) (9)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (36)   

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