KEGG   Elaeis guineensis (African oil palm): 109504734
Entry
109504734         CDS       T03921                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03030  DNA replication
egu03410  Base excision repair
egu03420  Nucleotide excision repair
egu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109504734
   03410 Base excision repair
    109504734
   03420 Nucleotide excision repair
    109504734
   03430 Mismatch repair
    109504734
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:egu03032]
    109504734
   03036 Chromosome and associated proteins [BR:egu03036]
    109504734
   03400 DNA repair and recombination proteins [BR:egu03400]
    109504734
DNA replication proteins [BR:egu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109504734
  DNA Replication Termination Factors
   ELG1-RFC complex
    109504734
Chromosome and associated proteins [BR:egu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    109504734
DNA repair and recombination proteins [BR:egu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109504734
  Check point factors
   HRAD17(Rad24)-RFC complex
    109504734
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA Rad17 DNA_pol3_delta RuvB_N Sigma54_activ_2 Mg_chelatase AAA_22 AAA_5 AAA_2 nSTAND3 AAA_11 ABC_tran DUF815 AAA_24 AAA_29 AAA_33 AAA_16 T2SSE
Other DBs
NCBI-GeneID: 109504734
NCBI-ProteinID: XP_010910653
UniProt: A0A6I9QJE3
Position
Unknown
AA seq 419 aa
MGQILQVPYPLPSLLNPHLHLVKSPLFFPAFPPLLTPLLLSRALSLSLQLLLHRAFFPLS
PPHPKMLWVDKYRPRTLDKVIVHEEIAGNLKKLISEQDCPHLLFYGPPGSGKKTLIMALL
KQMFGPGAEKVKLENKMWKIDAGTRKIELELTMLSSTHHVELNPSDAGFQDRYIVQEIIK
EMARNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE
AVRSRCLNIRVNAPTEEQIIKVLEFIGKKENLQLPPGFAARIAAQSNRSLRRAILSLETC
RVQQYPFTANQAVLPMDWEQYVSEIASDIIMEQSPKRLFLVRGKIYELLVNCIPPEIILK
KLLSELLKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKGFLIATFS
NT seq 1260 nt   +upstreamnt  +downstreamnt
atggggcaaattttgcaggtaccctacccgttgccatccctactaaacccccaccttcac
ctggtaaaatctcccctgttcttcccggccttcccgccacttctcacgcctctgttgctc
tcgcgcgcgctttctctctctctccagttgcttcttcacagagccttctttcctctctct
ccccctcatcctaagatgctgtgggtggacaagtaccggccaagaaccctagacaaggtc
attgtccacgaagagatcgccggaaacctcaagaagctgatttcggagcaggactgcccc
catcttctgttttatgggccgccaggttcgggcaagaaaaccctaatcatggccttgctc
aagcaaatgtttggccccggagctgagaaggtgaagttggagaacaagatgtggaagatc
gatgccggaactcggaaaattgaacttgagttgacgatgttatcgagcacccatcacgtg
gagctgaaccccagtgatgcaggctttcaagataggtacattgttcaggagattattaag
gaaatggcaaggaacagacctatagatactaaaggcaaaaagggatacaaagtgctcgtg
ctgaatgaagttgacaagctctcaagagaagctcaacattctctccggagaacaatggag
aaatatagtgcatcgtgccggttaatcttatgttgcaacagctcttcaaaagtaactgag
gctgttagatcccgctgtctgaacatacgggtgaatgcacctactgaagaacagattatc
aaagttttggaatttattggcaagaaggagaacctacaactcccacctggatttgcagct
cgtatagcagctcagtcaaaccgtagtttgagaagggcgatattatctttggaaacctgt
agagtgcagcagtatccattcacagcgaaccaagcagtgctgcccatggactgggaacaa
tatgtttccgaaatagcttctgatattattatggaacagagtcctaagaggttatttttg
gtccgtggaaaaatatatgagctacttgttaattgtattcctcctgaaatcattctgaag
aagttactgtcagaattactgaaaaagttggactctgaattgaaacatgaagtatgtcat
tgggctgcatactatgagcacaggatgcgtcttgggcagaaggccatattccacatagaa
gcattcgtggctaagttcatgagcatctacaaggggttcctcattgcaacattttcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (35)   

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