KEGG   Egretta garzetta (little egret): 104135616
Entry
104135616         CDS       T05152                                 
Symbol
VIM
Name
(RefSeq) vimentin
  KO
K07606  vimentin
Organism
egz  Egretta garzetta (little egret)
Pathway
egz04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:egz00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104135616 (VIM)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egz03019]
    104135616 (VIM)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:egz04812]
    104135616 (VIM)
   04147 Exosome [BR:egz04147]
    104135616 (VIM)
Messenger RNA biogenesis [BR:egz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     104135616 (VIM)
Cytoskeleton proteins [BR:egz04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     104135616 (VIM)
Exosome [BR:egz04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   104135616 (VIM)
  Exosomal proteins of other cancer cells
   104135616 (VIM)
SSDB
Motif
Pfam: Filament DUF1664 TolA_bind_tri DUF1759 DUF4200 TPR_MLP1_2 BLOC1_2 RBD-FIP DUF4515 CENP-F_leu_zip YezG-like T2SSF
Other DBs
NCBI-GeneID: 104135616
NCBI-ProteinID: XP_009647582
Position
Unknown
AA seq 374 aa
MADGGLRKVGESHGIAKPGMCQLEKSHGTKTVKRVQDDEGGYKEQATSSISSMYKFPKFA
HISDEWYDTELCMVFETIMGLRAEGCNGFKNEDLIWLQEEMLQREEAENTLQSFRQDVDN
ASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDV
RQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDA
LKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMA
LDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDG
QVINETSQHHDDLE
NT seq 1125 nt   +upstreamnt  +downstreamnt
atggctgacggaggactgagaaaggtgggtgaatcacatggcatagcaaaaccaggaatg
tgccagctggagaagagtcatgggacaaagacagtgaagagagttcaagatgatgaaggt
ggctacaaagagcaagcaactagcagcatttcctcaatgtataagtttccgaagtttgcc
cacatctctgatgagtggtacgatacagaactgtgcatggtgtttgagacaatcatggga
ctcagggcagagggctgtaatggctttaaaaatgaggacctgatttggctgcaggaggag
atgcttcagagggaggaggccgagaacaccctgcagtccttcagacaggatgttgacaat
gcctctctggcacgtctggatcttgagcgcaaagttgagtctctgcaagaggagattgtc
ttcttgaagaagcttcatgatgaggaaatccgagaactgcaggcccagctccaggaacag
cacatccaaattgatatggatgtttctaagcctgatcttactgctgccctgcgtgacgtt
cgccaacagtacgaaagtgttgctgctaagaatcttcaggaagctgaagagtggtacaag
tccaaatttgcagatctctctgaagctgctaataggaacaacgatgccctgcgccaggcc
aaacaagaagctaatgaataccgcagacagattcagtctctcacctgtgaagttgatgcc
cttaagggaagcaacgaatccctggagcgccagatgcgtgaaatggaggaaaattttgct
gttgaagctgctaactaccaagacactattggccgtctgcaggatgagattcagaacatg
aaggaagaaatggctcgccatctccgtgagtaccaggacctgctgaatgtaaagatggct
cttgatattgagattgccacctacagaaaactgctggagggtgaagagagcaggattaac
atgcctattccaacctttgcttctttgaacctgagagaaaccaacattgagtctcagcca
atggttgacactcactcaaagaggacacttctaattaagaccgttgaaactagagatgga
caggttattaatgaaacttcccagcatcacgatgacttggagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (27)   

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