KEGG   Encephalitozoon hellem: EHEL_030170
Entry
EHEL_030170       CDS       T02287                                 
Name
(RefSeq) RNA polymerase II large subunit Rpb1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
ehe  Encephalitozoon hellem
Pathway
ehe03020  RNA polymerase
ehe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ehe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EHEL_030170
  09124 Replication and repair
   03420 Nucleotide excision repair
    EHEL_030170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ehe03021]
    EHEL_030170
   03400 DNA repair and recombination proteins [BR:ehe03400]
    EHEL_030170
Enzymes [BR:ehe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EHEL_030170
Transcription machinery [BR:ehe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     EHEL_030170
DNA repair and recombination proteins [BR:ehe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      EHEL_030170
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7 RNA_pol_Rpb1_6 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 13467746
NCBI-ProteinID: XP_003886897
Position
III:complement(21716..26389)
AA seq 1557 aa
MFEEKVKKQIKSIQFGLFSPEEIRNGSAALIVHPEVMESGVPKVGGLIDLRMGTTDRMYL
CQSCGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPKRGAKSTLNS
VWSMSKGKTVCEGEAVGDERSGCGNRQPVVKKEGLTLVAFMKGEESNEGKVMLNGERVYS
IFKKISDEDCVYMGFDLKYSRPEWMILTVLLVPPPSVRPSIVMEGSLRGEDDLTHKLADI
IKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATLIDNDIGGQPQALQKSGRPLKSLSARL
KGKEGRIRGNLMGKRVDFSARTVITPDPNLSLEEVGVPLEVAKIHTFPEKVTSFNIDRLE
KLVRTGPNEHPGANYVLRSDGQKIDLNFNKSDIKLEEGYVVERHMQTGDVVLFNRQPSLH
KMSMMAHYARVMDDKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSKQI
ISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVNIEFCDTPPGSTGYIGFR
RTKDYDIMKVLKRPAIAKPMRLWTGKQILSFVLPNMNYTGFSSEHNDEDSENINDTKVII
QDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGI
GDTIADAKTVKMVEEAIRKAKEEVSVIIENARQNRLERLPGMTMKESFESHLNLVLNRAR
DVSGTSAQRSLSGNNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPH
FVKDDYTGRSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALE
DAIVRQDESVRSGNGLVYQVKYGEDGFDATFLESQKVDVKNFAKRYCIDMFGDGKLAITQ
GQVSEEVYGMLSSDVDLQKLLDQEYEWLVGEIFEGPPPISPGEIDIERDYQVKEVYKSAV
MSPCNFTRLLATAKRAFHLSVGDVSPYYILEAHRNLMTSNKILNVLIRTNLNVKRVLLEH
KLNTEAFNWVVEMTKAKILKARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSSTVTM
GVPRLKEIFNVTKNLKTPSMKIYLDKDHCKTIESAKAIQNEIECLCVKDLCLSSEIYYDP
EITGTEIDEDKDFVETYFEFPDDDVDFSCLSPFLIRLIVDRAKLIGRGTNMEYVAASIKK
ELGNGAHVICSDENAVDLVIRVRITKSDDESLNFYTTVLNTLLKLQLGGYKNVKKVYISE
DKDRREWYLQTDGICLPQVLGNPAVNSRLTVSNDLIEIAETLGIEAARESILRELAIVID
GNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKAGAGALKRSSFEETVEILLDAALVSE
KNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVFKPNDPVTPMISTPSSD
SLSINSGNWSPTHLEMAYPRDLSGRLSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSILTPNFSNKSKSKEQDGDKKRRNDGHF
NT seq 4674 nt   +upstreamnt  +downstreamnt
atgtttgaggagaaagtaaagaaacagatcaagtcgatacagttcggcctgttttcacca
gaggaaataagaaatgggagtgctgccttgattgttcatcccgaggtcatggaaagtggg
gttccaaaggttggagggcttattgatctgagaatggggacgactgacaggatgtatctt
tgccagagttgtgggggggacaacttctcatgcccaggacattttggacatattgagctt
acgaagcctatgtttcatgttggatacatttcaaaaattaagaaggtcctagagtgtgtt
tgcttctattgctccaagatcaaaataccgaagagaggggcgaagtccacgcttaacagt
gtatggagcatgagtaaaggcaagactgtgtgtgagggagaggccgttggtgatgaaaga
agtggatgtggaaacaggcagcctgtggtcaaaaaggagggtctaactcttgttgccttt
atgaagggagaagaaagtaacgagggcaaggtcatgctgaatggggaaagggtttatagt
atatttaagaagataagcgatgaggattgtgtgtatatggggtttgacttgaagtacagt
aggcctgaatggatgatacttactgtgctgcttgttccaccaccttcagtccgcccttca
attgtgatggagggttcgttgcggggagaagatgaccttacacataagttggctgatatc
ataaagtcgaatgggtatctgaaaaagtacgaacaggagggagcacctggacatattgtt
cgagactatgagcagctgctacagttccacgttgcaacgctgatagacaatgacattgga
gggcagccgcaagcgctgcagaagagcggaaggccactaaagtcattgtctgccaggtta
aaaggaaaggaaggaagaattagaggaaatctcatgggtaagagagttgattttagcgca
agaactgtaataacaccagatccgaatctatcacttgaagaggttggtgttcctcttgag
gttgcaaagattcacacattcccagagaaggttacttcgttcaacatagacaggctcgaa
aagcttgtaaggacaggacctaatgagcatcctggtgccaactatgtccttaggtctgat
ggacagaagatagatctgaatttcaacaaaagtgatataaagctggaggagggatatgtt
gtagaaaggcacatgcagacaggagatgttgttctgtttaacaggcagccctcgcttcac
aagatgtcaatgatggcacattatgctagggtgatggacgataagacctttaggttgaat
cttagtgttacatcaccctacaatgcagactttgatggagacgaaatgaatctccacatg
ccccaaagctatacatccaaggccgagcttgaggagctggcacttgtatcgaagcagatt
atctcaccccagtcgaacaaacctgttatgggtattgtgcaagatacacttacaggccta
cggctgtttactttgagagacacctttttgaatgaaagagaagttatgctgttattgtat
gcagtgaacatagaattctgcgatacaccgccaggaagcacgggctatatagggttcaga
agaacaaaagactatgacatcatgaaggtgctgaaaagacctgcaatagcaaagcctatg
aggctttggacaggaaaacaaattctgagctttgttcttccaaatatgaactatactgga
ttttcctctgagcataacgatgaagatagtgaaaatattaatgacactaaggtcattata
caagacgggtatattcattctggagtgattgacaaaaaggcagcaggagcaacacaaggt
ggacttgttcatataatcttcaatgattttgggcccaaaagagctgcgcagttttttaat
ggtgtacagaggatgataaacgttttcatgactggaatccatacgttttctataggaatt
ggagatacgattgcagatgccaaaacagtaaagatggtcgaggaggcgattcgaaaagca
aaggaggaggtctcagttataattgaaaatgcacgccaaaatcgtcttgagaggcttcct
ggaatgactatgaaagaaagctttgaaagccatttaaacctagtactaaatagagcaaga
gatgtaagtggaacaagtgcgcagaggagcttaagtggaaataacaatatgaagacgatg
gttcttgcagggtccaaggggtcttttatcaatatctcgcaggtgactgcttgtgtaggg
cagcagaatgttgaaggaaagcgaattccatttggcttctcccacagaacactccctcac
tttgtaaaggatgattacactgggaggagccgagggtttgttgaaaacagctatttaacc
gggctagatcctgaggagtttttcttccatgcgatgggaggaagagaaggactgattgac
acagcaatcaagacagcagaaacgggctatatccagaggaggttggtgaaggcgcttgag
gatgctattgtgaggcaggatgaaagtgttagaagtggaaatgggctggtgtatcaggta
aagtatggtgaggacgggtttgatgctacttttctggaatctcagaaggtcgatgtaaag
aacttcgcaaaaagatattgtattgatatgtttggggacgggaagttggcgattacccaa
ggccaagtttctgaggaagtctatggaatgctttcttcagatgtcgacttacagaagctt
ttggatcaagaatatgaatggttagttggagagatatttgaaggacctccaccaatttcg
ccgggagaaatagacatagagcgagactatcaggtcaaggaagtttacaagagcgccgta
atgagcccctgcaactttactcgtctcttagcaacagcaaagagagcttttcatctttct
gttggagacgtctctccttactatatacttgaggctcataggaatcttatgacatctaac
aaaatcctgaatgtacttataagaacaaatttgaatgtaaaaagagtccttcttgagcat
aaactgaataccgaggcattcaactgggttgtggagatgacaaaagcaaagatcctgaaa
gctaggataacaccaaacgaaatggtgggaacattggctgcacagtctgttggagaacct
gcgacacagatgacgttgaacacatttcacctggctggggtttcctccacagtgactatg
ggtgttcctagacttaaagaaattttcaatgtaacaaagaacctgaagacgccatccatg
aagatatatcttgataaggatcactgtaaaacaattgagtctgcaaaggcaattcagaac
gagatagaatgtttgtgtgtgaaggatttatgtctttcctcggaaatatactacgatcct
gaaataacaggcaccgagattgacgaggacaaggacttcgtggagacttattttgaattt
cccgatgacgatgttgacttttcatgtttatctccatttttgattaggcttatcgttgat
agagccaaacttattggcagaggaaccaatatggaatatgttgcagcatctatcaagaaa
gagctggggaatggagcccatgtgatttgtagtgatgaaaatgcggttgatttggtgata
agagttcgaattacaaagtcggatgatgagtccttaaatttctacacgactgtattgaac
acactactaaaacttcagcttggaggatataagaatgtcaaaaaggtttatataagtgag
gacaaggacagaagggagtggtatctccaaacggacgggatttgtcttccgcaggttcta
ggaaatcctgcggtgaacagtagacttactgtttctaacgatcttattgagattgctgaa
accttaggaattgaagctgcaagggaatctattttaagggaactggcaatagtgatagat
ggaaacgggtcatatgtcaattataggcacatgagtttgcttgctgatgtaatgacaatg
agggggtatctgtgtggtataaccaggcatggtgtcaacaaggctggggctggtgcgcta
aaaagaagttcttttgaagaaactgtagagatactcctagatgctgcactggtatcagag
aagaatttatgtagaggaataactgagaatattatgatggggcagttagcacctatgggg
actggaaatgttgaaattatgttggatgtaaagaagctggataaagctattccactatca
aatcctgtattcaagcccaatgatcctgttactccgatgattagtacaccttcatctgat
tctttatcaatcaacagtggtaattggagtcctacacaccttgaaatggcatatcctaga
gatttaagtggaaggttatcgcccactagtccatcgtactcgcccactagcccttcatac
tcacctactagtccatcgtactcgcccactagcccttcatactcacctactagcccttca
tactcacctactagtccatcgtactcacctactagtccatcgtactcgcccactagccct
tcatactcacctactagcccttcatattcaatactaactcctaacttctcaaacaaaagc
aaaagtaaggagcaagatggtgacaaaaaaagaagaaatgatggccatttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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